View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_16 (Length: 374)
Name: NF3388_high_16
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 356
Target Start/End: Complemental strand, 37763857 - 37763503
Alignment:
| Q |
2 |
gtggtagtagtaatataaagcttgctgcatttattaactccatcacaattttattcttgttagtttttctccacttcacacaatattgttaaattcattt |
101 |
Q |
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| T |
37763857 |
gtggtagtagtaatataaagcttgctgcatttattaactccatgacaattttattcttgttagtttttctccgcttcatacaatattgttaaattcattt |
37763758 |
T |
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| Q |
102 |
tactatacagatattaatttgtatccagaaatgggatatacgtgaaaataaaaataactgtaatagggtttacggacggagaattttctccaataaggat |
201 |
Q |
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| T |
37763757 |
tactatacagatattaatttatatccataaatgggatatacatgtgaataaaaataattgtattagggtttacagacggagaattttctccaataaggat |
37763658 |
T |
|
| Q |
202 |
ggagacggggaagaaaaccccgcctcacatgatggtttagagacgaaaatcataactcttatatgacgatccctgtcaaataaaaaagttttgatttcnn |
301 |
Q |
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| T |
37763657 |
ggagacggggaagaaaaccccacctcacatgatggtttagggacggaaatcataacccttatatgacgatccctgtcaaataaaaaagttttgatttaaa |
37763558 |
T |
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| Q |
302 |
nnnnnnttattttgacaagattaatttcaaagatttaattagtatatgtatttac |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37763557 |
aaagaattattttgacaagattaatttcaaagatttaattagtatatgtatttac |
37763503 |
T |
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