View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_17 (Length: 367)
Name: NF3388_high_17
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 1083521 - 1083870
Alignment:
| Q |
1 |
gtgaattttaatctgatgaattgaaacatgtttcctttatcaggaggtggcttggaatacagaagcaggagtagtttgtctgagagagagccaagcacaa |
100 |
Q |
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| T |
1083521 |
gtgaattttaatctgatgaattgaaacatgtttcctttatcaggaggtggcttggaatacagaagcaggagtagtttgtctgagagagagccaagcacaa |
1083620 |
T |
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| Q |
101 |
tcaaaaagagcaaaacaggtacatacacactttaccaattgaattgccttattttcatttgaaaatgatgacattaattagtacaaaatcttataaccct |
200 |
Q |
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| T |
1083621 |
tcaaaaagagcaaaacaggtacatacacactttaccaattgaattgccttattttcatttgaaaatgatgacattaattagtacaaaatcttataaccct |
1083720 |
T |
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| Q |
201 |
caattgtaattttacagagaaatttagcaggaactcgagtcaggttaggcgagcgaggatgaaccttgaccatcctagaattatagatgtccataactat |
300 |
Q |
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| T |
1083721 |
caattataattttacagagaaatttagcaggaactcgagtcaggttaggcgagcgaggatgaaccttgaccatcctagaattatagatgtccataactat |
1083820 |
T |
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| Q |
301 |
aggtatgctgcttgttatcttaataaaatcttcttttttgtgtgtttaat |
350 |
Q |
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| T |
1083821 |
aggtatgctgcttgttatcttaataaaatcttcttttttgtgtgtttaat |
1083870 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 46763361 - 46763453
Alignment:
| Q |
214 |
acagagaaatttagcaggaactcgagtcaggttaggcgagcgaggatgaaccttgaccatcctagaattatagatgtccataactataggtat |
306 |
Q |
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| T |
46763361 |
acagagaagtttagcaggagcacgagtcaggttaggcgaggaagaatgaatcttgaccatcctcgaattatcgatgtgcagaactataggtat |
46763453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 46763196 - 46763254
Alignment:
| Q |
62 |
gaagcaggagtagtttgtctgagagagagccaagcacaatcaaaaagagcaaaacaggt |
120 |
Q |
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| T |
46763196 |
gaagtaggaatagcttctctgagagagaaccatgcacaatcaaaaagagcaaaacaggt |
46763254 |
T |
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