View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3388_high_21 (Length: 331)
Name: NF3388_high_21
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 28523854 - 28524164
Alignment:
| Q |
10 |
aagaatatcaacattcacttgtaattataggatactagtaatgtcataattgtaaccggtaaatagttcaaattgttttaaaattgtacaacttcattgt |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28523854 |
aagaaaatcaacattcacttgtaattataggatactagtaatgtcataattgtaaccgttaaatagttcaaattgttttaaaattgtacaacatcattgt |
28523953 |
T |
|
| Q |
110 |
acaaacatgtctt-ta------tacattcgtgtacaaggagtactagtcaaacccgtgaacacaaagacaccaagaacaaattaaaacaaaagtgtatct |
202 |
Q |
| |
|
||||||||| | || |||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28523954 |
acaaacatgagatatacaacagtacatttgtgtaaaagaagtactagtcaaacccttgaacacaaagacaccaagaacaaattaaaacaaaagtgtatct |
28524053 |
T |
|
| Q |
203 |
tctttgtgtgattggggtttctcataggagcttgcataacacgaaacaaagaagaaaccccctttagtccttccctaccacatgctttctttttatgatt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28524054 |
tctttgtgtgattggggtttctcataggagcttgcataacacgaaacaaagaagaaaccccctttagtccttccctaccacatgctttctttttatgatt |
28524153 |
T |
|
| Q |
303 |
cttctaaaaac |
313 |
Q |
| |
|
||||||||||| |
|
|
| T |
28524154 |
cttctaaaaac |
28524164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University