View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3388_high_22 (Length: 327)
Name: NF3388_high_22
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 3042900 - 3042594
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3042900 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
3042801 |
T |
|
| Q |
118 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3042800 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
3042701 |
T |
|
| Q |
218 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3042700 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgtt |
3042601 |
T |
|
| Q |
318 |
ctctctc |
324 |
Q |
| |
|
||||||| |
|
|
| T |
3042600 |
ctctctc |
3042594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 3034858 - 3034567
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
117 |
Q |
| |
|
||||| |||||| || | ||||||||| ||||| | |||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3034858 |
accaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacatttcggtctcttatcaacttccaaagtgcataagctattatatccacaa |
3034759 |
T |
|
| Q |
118 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
217 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034758 |
acaccactacctgcactaacaatataagtacatatattatcaggcttagaccacactgtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
3034659 |
T |
|
| Q |
218 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3034658 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagagtggtagagactttactctcttgctctgacacattgtatttc |
3034567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 3055720 - 3055429
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
117 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055720 |
accaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattatatccacaa |
3055621 |
T |
|
| Q |
118 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
217 |
Q |
| |
|
|||||||| ||| || | || ||||| |||||||||||||||| ||||||||||| |||||||| | |||| ||| |||||||||| |||| ||||| |
|
|
| T |
3055620 |
acaccactcccttcattagcaatataattacatatattatcaggtttagaccacactatggtccaaacatcactctcagttgaattcttgggatacttgt |
3055521 |
T |
|
| Q |
218 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
309 |
Q |
| |
|
||| || |||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3055520 |
aaagtgtgaacactccatcaaaattaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttc |
3055429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 309
Target Start/End: Original strand, 3063589 - 3063862
Alignment:
| Q |
36 |
atcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactg |
135 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063589 |
atcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagctattatatccacaaacaccactacctgcacta |
3063688 |
T |
|
| Q |
136 |
acagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccat |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||||| | | ||||| |||| ||||||||||||| || |||||| |||| |
|
|
| T |
3063689 |
acagtataagtacatatattaaagggcttagaccatactgtggtccaaccttcactcttagttgaactcttaggatgcttgtaaagtgtgaacactccat |
3063788 |
T |
|
| Q |
236 |
caaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3063789 |
caaaattaagagttgctctaagataaaattgtgtggtcgagacgttactctcttcttcgaacacattgtatttc |
3063862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 3071246 - 3071489
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
117 |
Q |
| |
|
|||| |||||||||| | ||||| ||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
3071246 |
accatgtggatcatcaggatcaagcagtgagtaacgttttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaa |
3071345 |
T |
|
| Q |
118 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
217 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||| | ||| | ||||||||| || |||||| | ||| |||| |||| ||||| ||||||||| |
|
|
| T |
3071346 |
acaccactacctgaactaacaatatattgacatatatttttaggatgagaccacactgtagtccaatttccactatcagttgagttctttggatgcttga |
3071445 |
T |
|
| Q |
218 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataa |
261 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3071446 |
aaggtgaaaacactccatcaaaattaagagttgctctaagataa |
3071489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 25125374 - 25125466
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattata |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25125374 |
accaagtggatcatcgggatcaaccagtgagtaactttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 3067607 - 3067898
Alignment:
| Q |
18 |
accaagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaa |
117 |
Q |
| |
|
||||| |||||| || | ||| |||||||||||||||||| ||||| ||| |||||| | ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
3067607 |
accaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaa |
3067706 |
T |
|
| Q |
118 |
acaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgt |
217 |
Q |
| |
|
|||||||||||| | | |||| ||||||||| ||||||| ||||||||| | ||||||||| ||| |||| ||||| |||| |||||||| |
|
|
| T |
3067707 |
acaccactacctaatttaggaaaataatgacatatattttcaggctgagaccacactatagtccaacctccactatcagttgaactctttggatgcttaa |
3067806 |
T |
|
| Q |
218 |
aaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
309 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||||||||||| || || || ||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
3067807 |
gaagtgtgaacactccatcaaaattaagagttgctctaagataaaaattagtagtggagactttaaccttttcttttgacacatagtatttc |
3067898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 290
Target Start/End: Complemental strand, 3040693 - 3040439
Alignment:
| Q |
36 |
atcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactg |
135 |
Q |
| |
|
|||||| ||||||||||| | ||||||| || ||| ||||| | ||||| ||||||||||||| | |||||||||||||||||||||||||||| || | |
|
|
| T |
3040693 |
atcaactagtgagtaactatctggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagta |
3040594 |
T |
|
| Q |
136 |
acagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccat |
235 |
Q |
| |
|
||| |||| ||||||||| ||| | ||||||||| || |||||| | || |||| |||||||||||||||||||| ||| || ||||| |||| |
|
|
| T |
3040593 |
acaaaataatgacatatatttcgaggatgagaccacactgtagtccaatttccaatatcagttgaattcttcggatgcttgaaaagtgaaaacactccat |
3040494 |
T |
|
| Q |
236 |
caaaattaagagttgctctaagataataaagcgtggtagagactttactctcttc |
290 |
Q |
| |
|
||||||||| ||||||||||||||| || || || ||||||||||||||||| |
|
|
| T |
3040493 |
caaaattaattgttgctctaagataaaaatcagttgtggagactttactctcttc |
3040439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 309
Target Start/End: Original strand, 3065767 - 3065978
Alignment:
| Q |
95 |
tgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatc |
194 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||| ||| |||| |||| || ||||||| ||||| ||||| || |||||||||||| || |
|
|
| T |
3065767 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
3065863 |
T |
|
| Q |
195 |
aattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttct |
294 |
Q |
| |
|
| | ||| |||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||| || | ||| | || ||||||||||||| |||| |
|
|
| T |
3065864 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
3065963 |
T |
|
| Q |
295 |
gacacattgtatttc |
309 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3065964 |
tacacattgtatttc |
3065978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University