View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_24 (Length: 284)
Name: NF3388_high_24
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 45103786 - 45103536
Alignment:
| Q |
24 |
gcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataacannnn |
123 |
Q |
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| T |
45103786 |
gcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataacatttt |
45103687 |
T |
|
| Q |
124 |
nnnnn-gttgatcataatgatttacgatttatnnnnnnncataaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaaga |
222 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103686 |
ttttttgttgatcataatgatttaggatttataaaaaaacataaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaaga |
45103587 |
T |
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| Q |
223 |
ggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103586 |
ggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
45103536 |
T |
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