View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_27 (Length: 260)
Name: NF3388_high_27
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 36330946 - 36331196
Alignment:
| Q |
1 |
acagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgc |
100 |
Q |
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| T |
36330946 |
acagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgc |
36331045 |
T |
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| Q |
101 |
atcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgaggattg |
197 |
Q |
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| T |
36331046 |
atcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgaggattg |
36331145 |
T |
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| Q |
198 |
gttttcgactttttacttcggaggttggtgccgttcatctgttttcgtttc |
248 |
Q |
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| T |
36331146 |
gttttcgactttttacttcggaggttggtgtcgttcatctgttttcgtttc |
36331196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
158 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
194 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
158 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
194 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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