View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_28 (Length: 251)
Name: NF3388_high_28
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_28 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 142722 - 142477
Alignment:
| Q |
1 |
atgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142722 |
atgttttaaacatgaaatcattttcctgttcagattctttaacttttctcaaaaaaagttccattatgaaaactgagtctaacaaaatcatttccaaaaa |
142623 |
T |
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| Q |
101 |
cttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142622 |
cttctcatccgtacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgt |
142523 |
T |
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| Q |
201 |
ttattagataaacgtttccaaaatgcatgaaaatacctttgcttct |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
142522 |
ttattagataaacgtttccaaaatgcatgaaaatacctttgtttct |
142477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45960950 - 45961190
Alignment:
| Q |
1 |
atgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaa |
100 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45960950 |
atgttgtaaacatgaaatcatttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaa |
45961049 |
T |
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| Q |
101 |
cttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgt |
200 |
Q |
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| T |
45961050 |
cttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctaccaaagctaaagtttgt |
45961149 |
T |
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| Q |
201 |
ttattagataaacgtttccaaaatgcatgaaaatacctttg |
241 |
Q |
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| T |
45961150 |
ttatttgacaaacgtttccaaaatgcatgaaagtagctttg |
45961190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 297928 - 297724
Alignment:
| Q |
1 |
atgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngt-tccattatgaaaactgagtctaacaaaatcatttccaaaa |
99 |
Q |
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||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
297928 |
atgttgtaaacatgaaatcatctttctgttcagattctttagcttttctcaaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaa |
297829 |
T |
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| Q |
100 |
acttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
199 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
297828 |
gcttctcatccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
297729 |
T |
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| Q |
200 |
tttat |
204 |
Q |
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||||| |
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| T |
297728 |
tttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 27123741 - 27123916
Alignment:
| Q |
60 |
tccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggtttt |
159 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| || || | |||| |||| | ||||||||||| |||| |||||||| | ||||| |
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| T |
27123741 |
tccatgatgaaaactgagtctaacaaaatatattccacaaactgatccaccatccaaacttctggcttggaataacagttacttatattttcactgtttt |
27123840 |
T |
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| Q |
160 |
cttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttg |
241 |
Q |
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|||||| |||||||||||| || ||||||| |||||||| ||||||| ||||||||||| |||||| ||| |||| |
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| T |
27123841 |
attcaaggaaagctttatatcgtcccaaagc------ctgtttatttgataaacatttccaaaatgaatgaaagtacttttg |
27123916 |
T |
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