View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388_high_29 (Length: 251)

Name: NF3388_high_29
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388_high_29
NF3388_high_29
[»] chr4 (3 HSPs)
chr4 (134-243)||(51389502-51389611)
chr4 (67-129)||(51389164-51389226)
chr4 (4-41)||(14593827-14593864)
[»] chr5 (4 HSPs)
chr5 (71-129)||(42831259-42831317)
chr5 (3-40)||(26660445-26660482)
chr5 (3-40)||(26932037-26932074)
chr5 (4-40)||(36548415-36548451)
[»] chr1 (4 HSPs)
chr1 (67-129)||(49275785-49275847)
chr1 (71-128)||(49276578-49276635)
chr1 (4-40)||(11097919-11097955)
chr1 (4-40)||(35846354-35846390)
[»] chr3 (3 HSPs)
chr3 (71-129)||(40024975-40025033)
chr3 (74-129)||(40025957-40026012)
chr3 (4-41)||(2482709-2482746)
[»] chr2 (2 HSPs)
chr2 (71-129)||(41405917-41405975)
chr2 (4-40)||(39449267-39449303)
[»] chr8 (2 HSPs)
chr8 (80-118)||(32175904-32175942)
chr8 (3-40)||(11223893-11223930)
[»] chr7 (1 HSPs)
chr7 (4-42)||(42663082-42663120)
[»] scaffold0005 (1 HSPs)
scaffold0005 (4-41)||(223514-223551)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 51389502 - 51389611
Alignment:
Q  134 gtgaaaatagcagaaaatagaagaaggatcgagaagtttctttctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 233  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51389502 gtgaaaatagcagaaaacagaagaaggatcgagaagtttcttgctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 51389601  T
Q  234 atttcatctc 243  Q
    ||||||||||    
T  51389602 atttcatctc 51389611  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 51389164 - 51389226
Alignment:
Q  67 gaaagtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51389164 gaaaataccccataactttgagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 51389226  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 14593864 - 14593827
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctca 41  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  14593864 aagttgtcacaaaatggatattcaaatatcatttctca 14593827  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 42831317 - 42831259
Alignment:
Q  71 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  42831317 gtaccccacaacttggagttgtttggtaccagaaaaatctaaaaagtatggtatttttg 42831259  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 26660445 - 26660482
Alignment:
Q  3 gaagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26660445 gaagttgtcacaaaatggatgtacaaatatcatttctc 26660482  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 26932037 - 26932074
Alignment:
Q  3 gaagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26932037 gaagttgtcacaaaatggatgtacaaatatcatttctc 26932074  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 36548415 - 36548451
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||||||| || ||||||||||||||||    
T  36548415 aagttgtcacaaaatggttatacaaatatcatttctc 36548451  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 49275847 - 49275785
Alignment:
Q  67 gaaagtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    |||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||||    
T  49275847 gaaagtaccccacaacttggagttgtgtggtgccagaaaaatctaaaaagtatggtatttttg 49275785  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 49276578 - 49276635
Alignment:
Q  71 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtattttt 128  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  49276578 gtaccccacaacttggagttgtgtggtacaagaaaaatctaaaaagtagggtattttt 49276635  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 11097919 - 11097955
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    |||||||||||||||||||  ||||||||||||||||    
T  11097919 aagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 35846354 - 35846390
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  35846354 aagttgtcacaaagtggatatacaaatatcatttctc 35846390  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 40025033 - 40024975
Alignment:
Q  71 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    |||||||  ||||||||||||| | ||||||||||||||| ||||||| ||||||||||    
T  40025033 gtaccccgcaacttggagttgtgtggtaccagaaaaatcttaaaagtaaggtatttttg 40024975  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 40025957 - 40026012
Alignment:
Q  74 ccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    ||||| ||||||||||||| |  || ||||||||||||||||||| ||||||||||    
T  40025957 ccccacaacttggagttgtgtgttagcagaaaaatctaaaaagtagggtatttttg 40026012  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 2482709 - 2482746
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctca 41  Q
    |||||||||||||||||||  |||||||||||||||||    
T  2482709 aagttgtcacaaaatggatgtacaaatatcatttctca 2482746  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 41405975 - 41405917
Alignment:
Q  71 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 129  Q
    ||||||||||||||| |||||| | |||||||||||||||||  |||| ||||||||||    
T  41405975 gtaccccataacttgaagttgtgtggtaccagaaaaatctaaccagtagggtatttttg 41405917  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 39449303 - 39449267
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||||||||||  |||||||||||||||    
T  39449303 aagttgtcacaaaatggatattcaaatatcatttctc 39449267  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 32175942 - 32175904
Alignment:
Q  80 aacttggagttgtctcgtaccagaaaaatctaaaaagta 118  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  32175942 aacttggagttgtgtggtaccagaaaaatctaaaaagta 32175904  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 11223893 - 11223930
Alignment:
Q  3 gaagttgtcacaaaatggatacacaaatatcatttctc 40  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  11223893 gaagttgtcacaaaatggatgtacaaatatcatttctc 11223930  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 42663120 - 42663082
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctcat 42  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  42663120 aagttgtcacaaaatggatgtacaaatatcatttctcat 42663082  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 223514 - 223551
Alignment:
Q  4 aagttgtcacaaaatggatacacaaatatcatttctca 41  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  223514 aagttgtcacaaaatggatattcaaatatcatttctca 223551  T

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