View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_31 (Length: 246)
Name: NF3388_high_31
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 26836099 - 26836323
Alignment:
| Q |
7 |
ccaccaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagacaacttaaccgttactga |
106 |
Q |
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| T |
26836099 |
ccaccaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagacaacttaaccgttactga |
26836198 |
T |
|
| Q |
107 |
tatcaacggcaacatagtcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcacccta |
206 |
Q |
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| T |
26836199 |
tgtcaacggcaacatagttttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccccatcatcacccta |
26836298 |
T |
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| Q |
207 |
cgtcgcaaggtatgttcaactttat |
231 |
Q |
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||||||||||||||||||||||||| |
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| T |
26836299 |
cgtcgcaaggtatgttcaactttat |
26836323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 26789596 - 26789823
Alignment:
| Q |
4 |
ccaccaccaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagacaacttaaccgttac |
103 |
Q |
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| T |
26789596 |
ccaccaccaccatattcggctctcaatattgtgctccttaaccggtggatttagcggttgtgaaaaaggtaatgaccatggcagacaacttcactgttaa |
26789695 |
T |
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| Q |
104 |
tgatatcaacggcaacatagtcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcacc |
203 |
Q |
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| T |
26789696 |
agatgtcaatggcaacgtcgtgtttaaagtcaaaggttctctcttaaccctccgtgaccgccgtgtcttggttgatgcctccggtaaccccatcaccacc |
26789795 |
T |
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| Q |
204 |
ctacgtcgcaaggtatgttcaactttat |
231 |
Q |
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| T |
26789796 |
ctacgtcgcaaggtatgtactactttat |
26789823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 26795523 - 26795733
Alignment:
| Q |
24 |
cctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagac---aacttaaccgttactgatatcaacggcaaca |
120 |
Q |
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|||||||||||| |||| ||||||||||| || || |||||||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||| | |
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| T |
26795523 |
cctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgttactgatgtcaacggcaata |
26795622 |
T |
|
| Q |
121 |
tagtcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatg |
220 |
Q |
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| T |
26795623 |
ttgtcttcaaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggtaaccccatcaccaccctccgtcgtaaggtagg |
26795722 |
T |
|
| Q |
221 |
ttcaactttat |
231 |
Q |
| |
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||| ||||||| |
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| T |
26795723 |
ttccactttat |
26795733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 26805401 - 26805613
Alignment:
| Q |
9 |
accaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagac---aacttaaccgttactg |
105 |
Q |
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||||||||| | ||||||||||||||| |||| ||||| |||| | || ||||| ||||||||||| | ||| ||||| ||||| ||| || | |
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| T |
26805401 |
accaccatatttggccctcaatattgtgctccgtatccattggatttggctgtggtcaaaaaggtgatagcaatttcagacggaaacttcgtcgtcaccg |
26805500 |
T |
|
| Q |
106 |
atatcaacggcaacatagtcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccct |
205 |
Q |
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|| |||||||||| || |||||||||||||| | |||| | || ||| | ||||||| |||||||||||||||||| || | ||||||||||| |||||| |
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| T |
26805501 |
atgtcaacggcaatattgtcttcaaagttaaagtttctcttttaaccttccgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccct |
26805600 |
T |
|
| Q |
206 |
acgtcgcaaggta |
218 |
Q |
| |
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| T |
26805601 |
acgtcgcaaggta |
26805613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 26824629 - 26824772
Alignment:
| Q |
76 |
tgaccattgcagacaacttaaccgttactgatatcaacggcaacatagtcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggt |
175 |
Q |
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||||||||||||||||||||||| |||||||| |||||| |||||| ||||||| |||| |||||| || |||| |||||| ||||||| |
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| T |
26824629 |
tgaccattgcagacaacttaaccattactgatgtcaacgacaacattgtcttca------------ctgtatttaccctaggtgatcaccgtctcttggt |
26824716 |
T |
|
| Q |
176 |
tgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatgttcaactttat |
231 |
Q |
| |
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|||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
26824717 |
tgatgccgcccggaaccccatcatcaccctacgtcgtaaggtatgttcaactttat |
26824772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 26800317 - 26800523
Alignment:
| Q |
27 |
caatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagac---aacttaaccgttactgatatcaacggcaacatag |
123 |
Q |
| |
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||||||||| |||||||||||||||| | || || ||||||||||| ||||||||| |||| ||||| |||| |||||| ||||||||||||| | |
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| T |
26800317 |
caatattgtgctccatatccggtggatttggctgtcgtgaaaaaggttatgaccatttcagatggaaactttgccgtcactgatgtcaacggcaacatcg |
26800416 |
T |
|
| Q |
124 |
tcttcaaagttaagggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatgttc |
223 |
Q |
| |
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| T |
26800417 |
tgttcaaagtaaaaggttctctcttaaccctccgtgaccgccgtgtcttggttgatgccgctggttaccccatcgcaaccttgcgtcgcaaggtatcttc |
26800516 |
T |
|
| Q |
224 |
aacttta |
230 |
Q |
| |
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|| |||| |
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| T |
26800517 |
aatttta |
26800523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 26824226 - 26824300
Alignment:
| Q |
9 |
accaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccatt |
83 |
Q |
| |
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|||||||||||| |||||||||||||| ||| ||||||||| | | || || ||||||||||||||||||||| |
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| T |
26824226 |
accaccataatatgccctcaatattgtgatccgtatccggtgaatttggccgtagtgaaaaaggtgatgaccatt |
26824300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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