View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3388_high_34 (Length: 240)
Name: NF3388_high_34
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_34 |
 | |
|
| [»] scaffold0147 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 13081 - 13291
Alignment:
| Q |
20 |
aactggaccaagtctttcctttgagcttttgaagctggcagaaggctgtggaaaagtaaagtctgagtttatgtcgatgaaaaacctgtccacaatatcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13081 |
aactggaccaagtctttcctttgagcttttgaagctggcagaaggctgtggaaaagtaaagtctgagtttatgtcgatgaaaaacctgtccacaatatcg |
13180 |
T |
|
| Q |
120 |
agataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13181 |
agataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttca |
13280 |
T |
|
| Q |
220 |
tcttctgtgct |
230 |
Q |
| |
|
||||||||||| |
|
|
| T |
13281 |
tcttctgtgct |
13291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 7535 - 7707
Alignment:
| Q |
58 |
cagaaggctgtggaaaagtaaagtctgagtttatgtcgatgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaag |
157 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7535 |
cagagggctgtggaagagtgaagtctgagtttatgtcgatgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaag |
7634 |
T |
|
| Q |
158 |
tgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttcatcttctgtgct |
230 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| ||||||||||| | || |||||||||||||||| |
|
|
| T |
7635 |
tgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaattccttcatcttctgtgct |
7707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 43879205 - 43879078
Alignment:
| Q |
97 |
tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctga |
196 |
Q |
| |
|
|||||||| |||| |||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| |
|
|
| T |
43879205 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
43879106 |
T |
|
| Q |
197 |
ttccatcatatccattttcttcatcttc |
224 |
Q |
| |
|
|| |||| |||| || |||||||||| |
|
|
| T |
43879105 |
atcattcatctccaattccttcatcttc |
43879078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University