View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_8 (Length: 448)
Name: NF3388_high_8
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 47092268 - 47092692
Alignment:
| Q |
10 |
gcataggtggctctaacaggtgtattagaaatgaaagcagtcccatacacacataaaaatcaaataaaagaaagagtatttggaaccttagtggcagaaa |
109 |
Q |
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| T |
47092268 |
gcataggtggctctaacaggtgtattagaaatgaaagcagtcccatacacacataaaaatcaaataaaagaaagagtatttggaaccttagtggcagaaa |
47092367 |
T |
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| Q |
110 |
acaccatagccaattatcatgatcaccttgtaacatattatcttgaccttgacattgatgataatgcaaactctttcatcaatgcaaagttgcaaaaggt |
209 |
Q |
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| T |
47092368 |
acaccatagccaattatcatgatcaccttgtaacatattatcttgaccttgacattgatgataatgcaaactctttcatcaatgcaaagttgcaaaaggt |
47092467 |
T |
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| Q |
210 |
caaagcaagtgggtttggaacaccaagaaaaagttactggacggttaataaagaagctgtcaaaagggaagctgaggctagaattacgctcggcttagag |
309 |
Q |
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| T |
47092468 |
caaagcaagtggatttggaacaccaagaaaaagttactggacggttaataaagaagctgtcaaaagggaagctgaggctagaattacgctcggcttagag |
47092567 |
T |
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| Q |
310 |
ccaaatgagctgttaatagttaaccctaatgaaatgacaaagttaggtaatcaggtgggttaccggttgattagtggacaaccggttagttctttgttgg |
409 |
Q |
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| T |
47092568 |
ccaaatgagctgttaatagttaaccctaataaaatgacaaagttaggtaatcaagtgggttaccggttgattagtggacaaccggtcagttctttgttgg |
47092667 |
T |
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| Q |
410 |
acgatgatgattatccacaaagaag |
434 |
Q |
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| T |
47092668 |
acgatgatgattatccacaaagaag |
47092692 |
T |
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