View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_13 (Length: 413)
Name: NF3388_low_13
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 106 - 397
Target Start/End: Complemental strand, 36330816 - 36330525
Alignment:
| Q |
106 |
tttaggatgagaatgtacaatctgataatgagttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgag |
205 |
Q |
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| T |
36330816 |
tttaggatgagaatgtacaatctgataatgagttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgag |
36330717 |
T |
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| Q |
206 |
gatgatacaaggaattactggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgag |
305 |
Q |
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| T |
36330716 |
gatgatagaaggaattactggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgag |
36330617 |
T |
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| Q |
306 |
gttgttgtgtgtggtgatggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagggttcaatc |
397 |
Q |
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| T |
36330616 |
gttgttgtgtgtggtgatggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagggttcaatc |
36330525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 44371708 - 44371573
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
100 |
Q |
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| T |
44371708 |
aatgatgataatgacctttcttctgatttcgaggtttcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
44371609 |
T |
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| Q |
101 |
gtttgtttaggatgagaatgtacaatctgataatga |
136 |
Q |
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| T |
44371608 |
gtttgtttaggatgagaatgtacaatctgatgatga |
44371573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 44380563 - 44380428
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44380563 |
aatgatgataatgacctttcttctgatttcgaggtttcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
44380464 |
T |
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| Q |
101 |
gtttgtttaggatgagaatgtacaatctgataatga |
136 |
Q |
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| T |
44380463 |
gtttgtttaggatgagaatgtacaatctgatgatga |
44380428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52930250 - 52930209
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttat |
42 |
Q |
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| T |
52930250 |
aatgataataacgacctttcttctgattttgaggtatgttat |
52930209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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