View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_14 (Length: 382)
Name: NF3388_low_14
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 347
Target Start/End: Complemental strand, 43069559 - 43069243
Alignment:
| Q |
29 |
aacaaactactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagacactcatcgtgat |
128 |
Q |
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| T |
43069559 |
aacaaactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagtgaggagacactcat---gat |
43069463 |
T |
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| Q |
129 |
caatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgtgcat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43069462 |
caatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgtgcat |
43069363 |
T |
|
| Q |
228 |
gaaatgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069362 |
gaaatgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttat |
43069263 |
T |
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| Q |
328 |
tatacaagctcctcttgaag |
347 |
Q |
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|||||||||||||||||||| |
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| T |
43069262 |
tatacaagctcctcttgaag |
43069243 |
T |
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