View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_15 (Length: 380)
Name: NF3388_low_15
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 43559993 - 43559624
Alignment:
| Q |
1 |
caagcaagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatcacacaagtcttaaaccatgtgatcagagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43559993 |
caagcaagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatcacacaactcttaaaccatgtgatcagagt |
43559894 |
T |
|
| Q |
101 |
caattcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559893 |
caattcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaatt |
43559794 |
T |
|
| Q |
201 |
cagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaatatgagtactatttatccatctcaaatgag |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43559793 |
cagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaatatgagtactatttatccatcacaaatgag |
43559694 |
T |
|
| Q |
301 |
aagtactatgatggaaaataacaatgcagggttttgttgggatggatcagagaaaaatatagaccctttg |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559693 |
aagtactatgatggaaaataacaatgcagggttttgttgggatggatcagagaaaaatatagaccctttg |
43559624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 1992565 - 1992246
Alignment:
| Q |
5 |
caagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatcacacaagtcttaaaccatgtgatcagagtcaat |
104 |
Q |
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| T |
1992565 |
caagcattagaccctttgttctgctatgatttccaatct---tataacttacctatgactaattatcacgcaagccttaaaccatgtgattagagtcaat |
1992469 |
T |
|
| Q |
105 |
tcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagc |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
1992468 |
tcggacttaattcaagctatggattcacttcaatgccgagtctaacaaattcggatcacgcgaatgtgtttgtgacagagttttcatacaacaattcagc |
1992369 |
T |
|
| Q |
205 |
ttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaatatgagtactatttatccatctcaaatgagaagt |
304 |
Q |
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||||||| ||| ||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1992368 |
ttcaaaattcagctcattgttcattaatgatcaagggaaagaaagcaattcatgcaatagctcaaatatgagtactatttatccatctcaaatgagaagt |
1992269 |
T |
|
| Q |
305 |
actatgatggaaaataacaatgc |
327 |
Q |
| |
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||| || |||||||||| ||||| |
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| T |
1992268 |
actgtgttggaaaataataatgc |
1992246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 158 - 327
Target Start/End: Complemental strand, 44613852 - 44613683
Alignment:
| Q |
158 |
gatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaa |
257 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||||||||||||| |
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| T |
44613852 |
gatcacgcgaatgtgtttgtgacagagttttcatacaacaattcagcttcaaaattcagctcattgttcattaatgatcaagggaaagaaagcaattcat |
44613753 |
T |
|
| Q |
258 |
gcaatagctcaaatatgagtactatttatccatctcaaatgagaagtactatgatggaaaataacaatgc |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
44613752 |
gcaatagctcaaatatgagtactatttatccatctcaaatgagaagtactgtgatggaaaataataatgc |
44613683 |
T |
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