View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_18 (Length: 356)
Name: NF3388_low_18
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 3249876 - 3249549
Alignment:
| Q |
16 |
atataaacattagatatagtgaaatgaggccaaacgcttcggcgatgagacaagccgagcttttgcgaaacgacggtaacaattacttcaagaaaaaccg |
115 |
Q |
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| T |
3249876 |
atataaacattagatatagtgaaatgaggccaaacgcttcggcgatgagacaagccgaacttttgcgaaacgacggtaacaattacttcaagaaaaaccg |
3249777 |
T |
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| Q |
116 |
ttttaatgccgccatcgatgcttacactgaggtttcatccaaattttcaatttttactaacccttttcttttcaattgcaaaaattaaaactttgtttcg |
215 |
Q |
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| T |
3249776 |
ttttaatgccgccatcgatgcttacactgaggtttcatccaaattttcagtttttactaacccttttcttttcaattgcaaaaattaaaactttgtttcg |
3249677 |
T |
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| Q |
216 |
tttctgacatgggttttttgttttgtaggcaattacgctttgccccaatgttcccgtttatttcaccaatcgtgctttgtgtcatctcaaacgaaagtat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249676 |
tttctgacatgggttttttgttttgtaggcaattacgctttgccctaatgttcccgtttatttcaccaatcgtgctttgtgtcatctcaaacgaaagtat |
3249577 |
T |
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| Q |
316 |
gtatttttatcaattttatgattatgat |
343 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3249576 |
gtatttttatcaattttatgattatgat |
3249549 |
T |
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