View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_2 (Length: 489)
Name: NF3388_low_2
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 3592917 - 3592458
Alignment:
| Q |
11 |
cataggaataggtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
110 |
Q |
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| T |
3592917 |
cataggaataagtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
3592818 |
T |
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| Q |
111 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
210 |
Q |
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| T |
3592817 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
3592718 |
T |
|
| Q |
211 |
tagacactaaactaccatgtgttaacaaatcannnnnnnnatatttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagactt |
310 |
Q |
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| T |
3592717 |
tagaaactaaactaccatgtgttaacaaatcattttt----tttttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagactt |
3592622 |
T |
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| Q |
311 |
ctagatcatgattcaaccgtcttgaaccgcccgtgatcgaactgccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcg-nnnnnnnn |
409 |
Q |
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| T |
3592621 |
ctagatcatgattcaaccgtgttgaaccgcccgtgatcgaactgccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcgttttttttt |
3592522 |
T |
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| Q |
410 |
aaggtttgatatcagaatcatcccaaggaacatttagatcagttgagaccaaagaatcaatatc |
473 |
Q |
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| T |
3592521 |
aaggtttgatatcagaatcatcccaaggaacatttagatcagttgagaccaaagaatcaatatc |
3592458 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 35722446 - 35722383
Alignment:
| Q |
410 |
aaggtttgatatcagaatcatcccaa---ggaacatttagatcagttgagaccaaagaatcaat |
470 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||| |
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| T |
35722446 |
aaggtttgatatcagaatcatcccaataaggattctttagatcagttgaaaccaatgaatcaat |
35722383 |
T |
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