View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_20 (Length: 334)
Name: NF3388_low_20
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_20 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 9286 - 8984
Alignment:
| Q |
20 |
acctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgagaatagcatgaatttatgcatatacatacaataaaccaaagatgaatc |
119 |
Q |
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| T |
9286 |
acctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgagaatagcatgaatttatgcatatacatacaataaaccaaagatgaatc |
9187 |
T |
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| Q |
120 |
atgactttgttatacataagtacaagactagttcccatgattctagctatgagttcttaagatttttagtgcaagtatggtgcaatgtttaattttgagg |
219 |
Q |
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| T |
9186 |
atgactttgttatacataagtacaaggctagttcccatgattctagctatgagttcttaagatttttagtgcaagtatggtgcaatgtttaattttgagg |
9087 |
T |
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| Q |
220 |
ggatttaacatgatgaaaacataataatttgtatgtaaatttaagaattaaggggttcaattgaacaacctgagctctatatgtaactttgccgatgaac |
319 |
Q |
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| T |
9086 |
ggatttatcatgatgaaaacataataatttgtatgtaaatttaagaattaaggggttcaattgaacaacctgagctctatatgtaactttgccgatgaac |
8987 |
T |
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| Q |
320 |
cta |
322 |
Q |
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||| |
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| T |
8986 |
cta |
8984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 21541825 - 21541990
Alignment:
| Q |
19 |
aacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgagaatagcatgaatttatgcatatacatacaataaaccaaagatgaat |
118 |
Q |
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| T |
21541825 |
aacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgagaatagcatgaatttatgcatatacatatgataaaccaaagatgaat |
21541924 |
T |
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| Q |
119 |
catgact---ttgttatacataagtacaagactagttcccatgattctagctatgagttcttaaga |
181 |
Q |
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| T |
21541925 |
catgactttgttgttatacataagtacaagattagttcccatgattctagctatgagttcttaaga |
21541990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 19926263 - 19926151
Alignment:
| Q |
188 |
gtgcaagtatggtgcaatgtttaattttgaggggatttaacatgatgaaaacataataatttgtatgtaaatttaagaattaagg-ggttcaattgaaca |
286 |
Q |
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|||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||| ||| |||||| |||||| |
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| T |
19926263 |
gtgcaagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaacc |
19926164 |
T |
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| Q |
287 |
acctgagctctat |
299 |
Q |
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| T |
19926163 |
ccctgagctctat |
19926151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 8784115 - 8784032
Alignment:
| Q |
185 |
ttagtgcaagtatggtgcaatgtttaattttgaggggatttaacatgatgaaaacataataatttgtatgtaaatttaagaatt |
268 |
Q |
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| T |
8784115 |
ttagtgcaagtgtggtgcaatgtttacatttgaggggattcaacatgagaaaaacataacaatttgaatataaaattatgaatt |
8784032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 46615654 - 46615609
Alignment:
| Q |
188 |
gtgcaagtatggtgcaatgtttaattttgaggggatttaacatgat |
233 |
Q |
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| T |
46615654 |
gtgcaagtgtggtgcaatgtttatatttgaggggattcaacatgat |
46615609 |
T |
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