View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_23 (Length: 322)
Name: NF3388_low_23
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 121 - 306
Target Start/End: Complemental strand, 39865860 - 39865675
Alignment:
| Q |
121 |
agttacctttgatcacgagcaactaattcagagatttcaatatttttcatccaatcaatttcggacagtttctcacttgttgcagcattgactagctcgg |
220 |
Q |
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| T |
39865860 |
agttacctttgatcacgagcaactaattcagagatttcaatatttttcatccaatcaatttcggacagtttctcacttgttgcagcattgactagctcgg |
39865761 |
T |
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| Q |
221 |
ctgccatctttatttctacataaacatttaagaatcaaatagaatataaaagttgaaatatatttcagacgagaaagcaaatgttg |
306 |
Q |
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| T |
39865760 |
ctgccatctttatttctacataaacatttaagaatcaaatagaatataaaagttgaaatatatttcagatgagaaagcaaatgttg |
39865675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39865982 - 39865895
Alignment:
| Q |
3 |
ggattaaaaattaaaagattgagtttaattttgtagtgttttacttttggggcattcatgatcaactacaaagaaacaacaccaagag |
90 |
Q |
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| T |
39865982 |
ggattaaaaattaaaagattgagtttaattttgtagtgttttacttttggggcattcatgatcaactacaaagaaacaacaccaagag |
39865895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 44613949 - 44613842
Alignment:
| Q |
124 |
tacctttgatcacgagcaactaattcagagatttcaatatttttcatccaatcaatttcggacagtttctcacttgttgcagcattgactagctcggctg |
223 |
Q |
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| T |
44613949 |
taccttttatcacgtgcaaccaactcacatatttcaatattttttgcccaatcagtttcggccaatttctcgcttgttgcagcattgactaactcagctg |
44613850 |
T |
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| Q |
224 |
ccatcttt |
231 |
Q |
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| T |
44613849 |
ccatcttt |
44613842 |
T |
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