View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_3 (Length: 484)
Name: NF3388_low_3
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 31339820 - 31340277
Alignment:
| Q |
17 |
actatattggtgactttgagttgtgtgggtttggaaagttatacaagtaatgttatattttaacgaaattatatttaattgaatgcatgtgtgttttcta |
116 |
Q |
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| T |
31339820 |
actatattggtgactttgagttgtgtgggtttggaaagttatacaagtaatgttatattttaacgaaattatatttaattgaatgcatgtgtgttttcta |
31339919 |
T |
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| Q |
117 |
cgcatgatagggtgccttgtttaggatgtatttatcacaacgatgttcatattgatgattatctgctttcatatgatttagaataaataaattttcctat |
216 |
Q |
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| T |
31339920 |
cgcatgatagggtgccttgtttaggatgtatttatcacaacgatgttcatattgatgattatctgctttcatatgatttagaataaataaattttcctat |
31340019 |
T |
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| Q |
217 |
tgaaatgtaataagtgatgtttgcatatgaatatatgtgatataagcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcata |
316 |
Q |
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| T |
31340020 |
tgaaatgtaataagtgatgtttgcatatgaatatatgtgatataagcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcata |
31340119 |
T |
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| Q |
317 |
tgttaagttgacaatgcatgttcatgcatatcatatatagttacatttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtg |
416 |
Q |
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| T |
31340120 |
tgttaagttgacaatgcatgttcatgcatatcatatatagttacatttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtg |
31340219 |
T |
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| Q |
417 |
gtgaggtttccggtgatagggacccatctaaattctacaaaattttattgagcctttg |
474 |
Q |
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| T |
31340220 |
gtgaggtttccggtgatagggacccatctaaattctacaaaattttattgagcctttg |
31340277 |
T |
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