View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388_low_33 (Length: 242)

Name: NF3388_low_33
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388_low_33
NF3388_low_33
[»] chr7 (6 HSPs)
chr7 (1-223)||(46132540-46132762)
chr7 (73-223)||(46705598-46705755)
chr7 (135-223)||(2755514-2755602)
chr7 (135-223)||(17897737-17897825)
chr7 (1-82)||(17897823-17897904)
chr7 (1-49)||(46705535-46705586)
[»] chr8 (5 HSPs)
chr8 (135-216)||(27072299-27072380)
chr8 (135-208)||(35771840-35771913)
chr8 (135-198)||(11179686-11179749)
chr8 (1-82)||(11179747-11179828)
chr8 (1-66)||(27072394-27072459)
[»] chr5 (6 HSPs)
chr5 (135-223)||(9672722-9672810)
chr5 (135-223)||(36778526-36778614)
chr5 (135-223)||(32294337-32294425)
chr5 (1-82)||(9587771-9587852)
chr5 (1-82)||(32294423-32294504)
chr5 (7-66)||(36778453-36778512)
[»] scaffold1532 (2 HSPs)
scaffold1532 (135-223)||(538-626)
scaffold1532 (1-82)||(624-705)
[»] scaffold0083 (2 HSPs)
scaffold0083 (135-223)||(3562-3650)
scaffold0083 (1-82)||(3483-3564)
[»] chr4 (6 HSPs)
chr4 (135-223)||(10663088-10663176)
chr4 (135-223)||(10877233-10877321)
chr4 (135-223)||(26763022-26763110)
chr4 (1-82)||(10663009-10663090)
chr4 (1-82)||(10877154-10877235)
chr4 (2-82)||(26763108-26763188)
[»] chr3 (2 HSPs)
chr3 (135-223)||(42802841-42802929)
chr3 (135-221)||(52394757-52394843)
[»] chr2 (2 HSPs)
chr2 (135-223)||(44747283-44747371)
chr2 (7-82)||(44747210-44747285)
[»] scaffold0945 (2 HSPs)
scaffold0945 (135-223)||(1887-1976)
scaffold0945 (1-82)||(1974-2055)
[»] chr1 (4 HSPs)
chr1 (1-82)||(14404093-14404174)
chr1 (135-191)||(14404172-14404228)
chr1 (159-223)||(30635015-30635078)
chr1 (1-71)||(11184666-11184736)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46132540 - 46132762
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaagaattgataggggaatgt 100  Q
    |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46132540 tatttgaggggaaataggataaaaaggtaatatagtgattttcttgatgattgattaattaaatttgatctggagaagtgaagaattgataggggaatgt 46132639  T
Q  101 ttgcgtttgtgtcacatatacacttcctatcctagaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46132640 ttgcgtttgtgtcacatatacacttcctatcctagaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgc 46132739  T
Q  201 atgtcataatagaggataatgca 223  Q
    ||||||||| |||||||||||||    
T  46132740 atgtcataacagaggataatgca 46132762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 46705598 - 46705755
Alignment:
Q  73 gaaaagtgaagaattgataggggaatgtttgcgtttgtgtcacatatacacttc-------ctatcctagaatgaatgataccatcttaaaagtaggaac 165  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||       ||||||| ||||||||||||||||||||||| |||||||    
T  46705598 gaaaagtgaagaattgacaggggaatgtttgtgtttgtgtcacagatacacttcttatattctatcctggaatgaatgataccatcttaaaaataggaac 46705697  T
Q  166 tagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    || |||||||| |||||| |||||||||||||||||||||||| |||| || ||||||    
T  46705698 taatttgaggtctggtctattctttttcacattgcatgtcatattagaagaaaatgca 46705755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 2755514 - 2755602
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||||||||||| |||||| || |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  2755514 gaatgaatgataccattttaaaaatatgaactaatttgaggtttggtcttttcttttttacattgcatgtcatattagaggaaaatgca 2755602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 17897825 - 17897737
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||||||||||| |||| ||||  ||||||||| |||||||||||||||||||||||||||||  |||||| ||||||    
T  17897825 gaatgaatgataccatcttaaaaataggtactaacttgaggttttgtcttttctttttcacattgcatgtcatatcagaggaaaatgca 17897737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17897904 - 17897823
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||| ||||||||||| | | |||| | || |||||||||||||| ||||| ||||||||| ||| ||| |||||||    
T  17897904 tatttggggagaaataggatagatatgtaacatagtgattttcttgatgactgatttattaaatttaatcaggagaagtgaa 17897823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46705535 - 46705586
Alignment:
Q  1 tatttggggggaaataggat---aaaaaggtaatacagcgattttcttgatg 49  Q
    ||||||||||||||||||||   |||||||||||| || |||||||||||||    
T  46705535 tatttggggggaaataggataaaaaaaaggtaatatagtgattttcttgatg 46705586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 27072380 - 27072299
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagagga 216  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27072380 gaattaatgataccatcttaaaaataagaactaatttgaggtttggtcttttctttttcacattgcatgtcataatagagga 27072299  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 35771840 - 35771913
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcata 208  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  35771840 gaatgaatgataccatcttaaaaataggaactaatttgaggtttggtcttttctttttcacattgcaagtcata 35771913  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 11179749 - 11179686
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacatt 198  Q
    |||||||||||| |||||||||  ||||||| | ||||||||||||||||||||||||||||||    
T  11179749 gaatgaatgatatcatcttaaagataggaacaaatttgaggtttggtcttttctttttcacatt 11179686  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11179828 - 11179747
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    |||||||||||||||| |||| | |||||| | || ||||| |||||||||||||| ||||||||| |||| || |||||||    
T  11179828 tatttggggggaaatatgatagataggtaacatagtgatttccttgatgattgatttattaaatttaatcttgagaagtgaa 11179747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27072459 - 27072394
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaattt 66  Q
    ||||||||||||||| ||||| |||||||| |  | ||||| ||||| |||||||| |||||||||    
T  27072459 tatttggggggaaatgggatagaaaggtaacatggtgatttccttgacgattgatttattaaattt 27072394  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 9672810 - 9672722
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  9672810 gaatgaatgataccatcttaaaaataggaactaatttgagatttggtcttttctttttcacattgtatgtcatattagaggaaaatgca 9672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 36778526 - 36778614
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  36778526 gaatgaatgataccaacttaaaaataggaactaatttgaggtttagtcttttctttttcacattgcatgtcatattagaggaaaatgca 36778614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 32294425 - 32294337
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||||||| |||||||||| ||  ||||| |||||||||||| ||||||||||||||||||||||||||| || |||| ||||||    
T  32294425 gaatgaatgatatcatcttaaaaataataactaatttgaggtttggacttttctttttcacattgcatgtcatattacaggaaaatgca 32294337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9587771 - 9587852
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||||||||||||||| |||||||| | |  ||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  9587771 tatttggggggaaataggatacaaaggtaacatattgatttccttgatgattgatttattaaatttaatctggagaagtgaa 9587852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32294504 - 32294423
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    |||||||||||||||| |||| |||||||| | || ||||| |||||||||||||| ||||||||| ||||| | |||||||    
T  32294504 tatttggggggaaataagatagaaaggtaacatagtgatttccttgatgattgatttattaaatttaatctgaagaagtgaa 32294423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 36778453 - 36778512
Alignment:
Q  7 gggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaattt 66  Q
    ||||||||||||||| |||||||  | || ||||| |||||||||||||| |||||||||    
T  36778453 gggggaaataggatagaaaggtagcatagtgatttccttgatgattgatttattaaattt 36778512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 626 - 538
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  626 gaatgaatgatatcatctttaaaataggaacaaatttgaggtttggtcttttctttttcacattgcatgtcatattagaggaaaatgca 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 705 - 624
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    |||||| |||||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  705 tatttgaggggaaataggatagaaaggtaacatagcgatttccttgatgattgatttattaaatttaatctggagaagtgaa 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 3562 - 3650
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||    
T  3562 gaatgaatgatatcatcttaaaaataggaactaatttgaggtttggtcttttctttttcacaccgcatgtcatattagaggaaaatgca 3650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3483 - 3564
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    |||||||||| |||||||||| |||||||| | |  | ||| |||||||||||||| ||||||||| ||||||| |||||||    
T  3483 tatttgggggaaaataggatagaaaggtaacataatggtttccttgatgattgatttattaaatttaatctggagaagtgaa 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 10663088 - 10663176
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  10663088 gaatgaatgataccatcttaaaaatacgaactaatttgagggttggtcttttctttttcatattgcatgtcatattagaggaaaatgca 10663176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 10877233 - 10877321
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  10877233 gaatgaatgataccatcttaaaaatacgaactaatttgagggttggtcttttctttttcatattgcatgtcatattagaggaaaatgca 10877321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 26763110 - 26763022
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||||||| |||||||||| || |||||| |||||||||| ||| ||||||||| |||||||||||||||  |||||| ||||||    
T  26763110 gaatgaatgatatcatcttaaaaatatgaactaatttgaggttttgtcctttcttttttacattgcatgtcatatcagaggaaaatgca 26763022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10663009 - 10663090
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||||||||||||||| ||| |||| | || ||||| |||||||||||||| ||||||||| ||||| | |||||||    
T  10663009 tatttggggggaaataggatagaaatgtaacatagtgatttccttgatgattgatttattaaatttaatctgaagaagtgaa 10663090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10877154 - 10877235
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||||||||||||||| ||| |||| | || ||||| |||||||||||||| ||||||||| ||||| | |||||||    
T  10877154 tatttggggggaaataggatagaaatgtaacatagtgatttccttgatgattgatttattaaatttaatctgaagaagtgaa 10877235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 26763188 - 26763108
Alignment:
Q  2 atttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||| ||||| |||| ||| |||| | |  ||||| |||||||||| ||| ||||||||| || ||||||||||||    
T  26763188 atttgggggaaaatatgatagaaatgtaacataatgatttccttgatgattaatttattaaatttaatatggaaaagtgaa 26763108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 42802929 - 42802841
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||    
T  42802929 gaatgaatgataccatcttaaaaataagaactaatttgaggtttgatcttttctttttcacattgcatgccatattagaggaaaatgca 42802841  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 52394757 - 52394843
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatg 221  Q
    |||||||||||||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||| ||||    
T  52394757 gaatgaatgataccatctaaataataggaactaatttgaggtttagtcttttctttttcacattgcatgtcatattacaggaaaatg 52394843  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 44747283 - 44747371
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||| |||||||||||||||| || |||||| ||||||||||| |||||||||||||||||| | ||||||| ||||||| ||||||    
T  44747283 gaatgactgataccatcttaaaaatatgaactaatttgaggtttgatcttttctttttcacattccttgtcatattagaggaaaatgca 44747371  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 44747210 - 44747285
Alignment:
Q  7 gggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||||||||| |||||||| | || |||||||||||||||||||| ||||||||| ||||||| |||||||    
T  44747210 gggggaaataggatagaaaggtaacatagtgattttcttgatgattgatttattaaatttaatctggagaagtgaa 44747285  T

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Target: scaffold0945 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0945
Description:

Target: scaffold0945; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 1976 - 1887
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttt-tctttttcacattgcatgtcataatagaggataatgca 223  Q
    |||||||| ||| |||||||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||| ||||||| ||||||    
T  1976 gaatgaattatatcatcttaaaaataggaactaatttgaggtttggtctttaattttttcacattgcatgtcatattagaggaaaatgca 1887  T

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Target: scaffold0945; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2055 - 1974
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||| ||||||||||| |||||||| | || ||||| ||||||  |||||| ||||||||| ||||||| |||||||    
T  2055 tatttggggtgaaataggatagaaaggtaacatagtgatttccttgatagttgatttattaaatttaatctggagaagtgaa 1974  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14404093 - 14404174
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatctggaaaagtgaa 82  Q
    ||||||||||||||||||| | |||||||| | || ||||| |||||||||||||| ||||||||| ||| ||| |||||||    
T  14404093 tatttggggggaaataggacagaaaggtaacatagtgatttccttgatgattgatttattaaatttaatcaggagaagtgaa 14404174  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 14404172 - 14404228
Alignment:
Q  135 gaatgaatgataccatcttaaaagtaggaactagtttgaggtttggtcttttctttt 191  Q
    ||||||||||||||||||||||| ||  ||||| ||||||||||| |||||||||||    
T  14404172 gaatgaatgataccatcttaaaaatataaactaatttgaggtttgatcttttctttt 14404228  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 30635078 - 30635015
Alignment:
Q  159 taggaactagtttgaggtttggtcttttctttttcacattgcatgtcataatagaggataatgca 223  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||  ||||||| ||||||    
T  30635078 taggaactaatttgaggtttggtcttttc-ttttcacattgcaagtcatgttagaggaaaatgca 30635015  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 11184666 - 11184736
Alignment:
Q  1 tatttggggggaaataggataaaaaggtaatacagcgattttcttgatgattgattaattaaatttgatct 71  Q
    ||||| || |||||||||||| |||||||| | || ||||| |||||||||| ||| ||||||||| ||||    
T  11184666 tatttcggcggaaataggatagaaaggtaacatagtgatttccttgatgattaatttattaaatttaatct 11184736  T

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