View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_38 (Length: 227)
Name: NF3388_low_38
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 36986899 - 36987002
Alignment:
| Q |
119 |
cagaaggaagcttcttatatatatctgaatctcataaaatgttttgcaggtaattatttctattaacctgaaacaccttgcttatataatataaatgtca |
218 |
Q |
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| T |
36986899 |
cagaaggaagcttcttatatatatctgaatctcataaaatgttttgcaggtaattatttctactaacctgaaacaccttgcttatataatataaatgtca |
36986998 |
T |
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| Q |
219 |
tctt |
222 |
Q |
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|||| |
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| T |
36986999 |
tctt |
36987002 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36986781 - 36986839
Alignment:
| Q |
1 |
ctgtctccgacaaacctccttgggggctccctccattccacatcgtcatcagcacacgt |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36986781 |
ctgtctccgacaaacctccttgggggctccctccattccacatcatcatcagcacacgt |
36986839 |
T |
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