View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_4 (Length: 480)
Name: NF3388_low_4
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 2913571 - 2913120
Alignment:
| Q |
19 |
ttatttgcgctcaattttttattacaccagtttgttctaatactctttaaaattatctactcaaggaattgtgtttgacggactttcatattgatttgag |
118 |
Q |
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| T |
2913571 |
ttatttgcgctcaattttttattacaccagtttgttctaatactctttaaaattatctactcaaggaattgtgtttgacggactttcatattgatttgag |
2913472 |
T |
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| Q |
119 |
ttgttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaataggtttggcttgtgcctgctaaaca |
218 |
Q |
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| T |
2913471 |
tttttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaataggtttggcttgtgcctgctaaaca |
2913372 |
T |
|
| Q |
219 |
aatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaaatatcatggaccgatgatttgcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2913371 |
aatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaaatatcatggaccgatgatttgcttc |
2913272 |
T |
|
| Q |
319 |
tgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacaga |
418 |
Q |
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| T |
2913271 |
tgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacaga |
2913172 |
T |
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| Q |
419 |
ttttttatgaggatgaggagttcctaagttctgcatgactttacggcctatg |
470 |
Q |
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| T |
2913171 |
ttttttatgaggatgaggagttcctaagttctgcatgactttacggcctatg |
2913120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 450
Target Start/End: Complemental strand, 2919333 - 2919224
Alignment:
| Q |
340 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
439 |
Q |
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|||||||||||||| |||||| |||||||| ||||||||||||| | ||||||||| ||| |||||||||||||||||||||| | |||||||||| ||| |
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| T |
2919333 |
aactgatcacattg-ggttttatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagt |
2919235 |
T |
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| Q |
440 |
tcctaagttct |
450 |
Q |
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|||| |||||| |
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| T |
2919234 |
tcctcagttct |
2919224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 37794201 - 37794093
Alignment:
| Q |
343 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
442 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||| | ||||| || | |||||||| | || |||||| || ||| |
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| T |
37794201 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaatttctgatggaatccaaaaacatgcagattttctgggaagatgagaagctcc |
37794103 |
T |
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| Q |
443 |
taagttctgc |
452 |
Q |
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| |||||||| |
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| T |
37794102 |
tcagttctgc |
37794093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 452
Target Start/End: Original strand, 3013947 - 3014058
Alignment:
| Q |
340 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
439 |
Q |
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|||| ||||||||| ||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||| |
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| T |
3013947 |
aactaatcacattg-ggttttgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagt |
3014045 |
T |
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| Q |
440 |
tcctaagttctgc |
452 |
Q |
| |
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| T |
3014046 |
ttctcagttctgc |
3014058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 2945476 - 2945366
Alignment:
| Q |
340 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
439 |
Q |
| |
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|||| ||||||||| |||| |||| ||||| ||||||||||||||| ||| ||||| ||| | || |||||||| |||||| ||| |||||||||| |
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| T |
2945476 |
aactaatcacattg-ggttatgtgatgaaattcaagaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagt |
2945378 |
T |
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| Q |
440 |
tcctaagttctg |
451 |
Q |
| |
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|||| ||||||| |
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| T |
2945377 |
tcctcagttctg |
2945366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 2908508 - 2908394
Alignment:
| Q |
151 |
agatatgagacacgtgattctataaaagaattaaaaaatgaataggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggt-ta |
249 |
Q |
| |
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||||| || |||| ||||| |||| ||||| | ||||||| ||||||||| ||||||| |||||||||||||||| ||| ||| ||||||| || | |
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| T |
2908508 |
agataagaaacacttgattttatagaagaaatgaaaaatggataggtttg-cttgtgc----taaacaaatacctgctgtagctgtgtgaagatagtgca |
2908414 |
T |
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| Q |
250 |
gagtgtaatattattttcat |
269 |
Q |
| |
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||||||||||||| |||||| |
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| T |
2908413 |
gagtgtaatattactttcat |
2908394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 452
Target Start/End: Complemental strand, 2928818 - 2928724
Alignment:
| Q |
358 |
tttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgc |
452 |
Q |
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||||| |||||| | ||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||||||| |||||||| |
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| T |
2928818 |
tttgttctgaaatttaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctcagttctgc |
2928724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 454
Target Start/End: Complemental strand, 28023214 - 28023104
Alignment:
| Q |
343 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
442 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| | |||||| |||||| | ||||| || ||||||||||| | |||||||||| || ||| |
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| T |
28023214 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaattcctgatggaatccaacaacttacagattttctgtgaggatgagaagctcc |
28023116 |
T |
|
| Q |
443 |
taagttctgcat |
454 |
Q |
| |
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| |||||||||| |
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| T |
28023115 |
tcagttctgcat |
28023104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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