View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388_low_41 (Length: 205)

Name: NF3388_low_41
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388_low_41
NF3388_low_41
[»] chr7 (10 HSPs)
chr7 (42-170)||(42681195-42681323)
chr7 (98-170)||(31299701-31299773)
chr7 (98-170)||(42681339-42681411)
chr7 (98-173)||(18581945-18582021)
chr7 (98-171)||(19531553-19531627)
chr7 (98-172)||(18343912-18343987)
chr7 (98-164)||(18347441-18347508)
chr7 (104-172)||(18344821-18344890)
chr7 (106-173)||(9901996-9902064)
chr7 (106-173)||(36430590-36430658)
[»] chr5 (5 HSPs)
chr5 (98-172)||(34180901-34180975)
chr5 (98-171)||(4195746-4195819)
chr5 (98-171)||(6685888-6685962)
chr5 (98-170)||(10050875-10050948)
chr5 (104-164)||(9246611-9246672)
[»] chr8 (2 HSPs)
chr8 (98-170)||(41264117-41264189)
chr8 (106-173)||(33332313-33332381)
[»] chr4 (4 HSPs)
chr4 (99-171)||(14066298-14066370)
chr4 (98-170)||(53051469-53051541)
chr4 (98-171)||(1452386-1452460)
chr4 (104-170)||(748592-748659)
[»] chr1 (3 HSPs)
chr1 (98-170)||(28375692-28375764)
chr1 (99-171)||(29529072-29529144)
chr1 (98-170)||(395450-395523)
[»] chr3 (2 HSPs)
chr3 (99-172)||(30440644-30440717)
chr3 (98-170)||(45082748-45082821)
[»] chr2 (1 HSPs)
chr2 (99-171)||(17955705-17955777)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 42681323 - 42681195
Alignment:
Q  42 ataagcaagttaatagaattgtatatgaaataactcgcttcttatcataataaattagccgacttagctcagtggtagagcgcgtggcttttaaccacgt 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42681323 ataagcaagttaatagaattgtatatgaaataacacgcttcttatcataataaattagccgacttagctcagtggtagagcgcgtggcttttaaccacgt 42681224  T
Q  142 ggtcgtgggttcgatccccacagtcggcg 170  Q
    |||||||||||||||||||||||||||||    
T  42681223 ggtcgtgggttcgatccccacagtcggcg 42681195  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 31299701 - 31299773
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31299701 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 31299773  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 42681411 - 42681339
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42681411 agccgtcttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 42681339  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 18582021 - 18581945
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaaa 173  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  18582021 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcgaaa 18581945  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 19531553 - 19531627
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  19531553 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcga 19531627  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 18343912 - 18343987
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaa 172  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  18343912 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgaa 18343987  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 18347441 - 18347508
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacag 164  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  18347441 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacag 18347508  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 18344821 - 18344890
Alignment:
Q  104 cttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaa 172  Q
    |||||||||| ||||||||||| ||||||||||||| |||||||||||||||||  |||||| |||||||    
T  18344821 cttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattgccacagacggcgaa 18344890  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 9901996 - 9902064
Alignment:
Q  106 tagctcagt-ggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaaa 173  Q
    ||||||||| ||||||||||  |||| ||||||  |||||||||||||||| |||||| || |||||||    
T  9901996 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgaaa 9902064  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 36430658 - 36430590
Alignment:
Q  106 tagctcagt-ggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaaa 173  Q
    ||||||||| ||||||||||  |||| ||||||  |||||||||||||||| |||||| || |||||||    
T  36430658 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgaaa 36430590  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 34180901 - 34180975
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34180901 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaa 34180975  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 4195819 - 4195746
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4195819 agccgtcttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcga 4195746  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 6685962 - 6685888
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  6685962 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcga 6685888  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 10050948 - 10050875
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10050948 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 10050875  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 9246611 - 9246672
Alignment:
Q  104 cttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacag 164  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9246611 cttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacag 9246672  T

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Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 41264117 - 41264189
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41264117 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 41264189  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 33332381 - 33332313
Alignment:
Q  106 tagctcagt-ggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaaa 173  Q
    ||||||||| ||||||||||  |||| ||||||  |||||||||||||||| |||||| || |||||||    
T  33332381 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgaaa 33332313  T

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Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 14066370 - 14066298
Alignment:
Q  99 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14066370 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 14066298  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 53051541 - 53051469
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53051541 agccgtcttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 53051469  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 1452460 - 1452386
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  1452460 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcga 1452386  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 748592 - 748659
Alignment:
Q  104 cttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||    
T  748592 cttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtttgattcccacagacggcg 748659  T

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Target: chr1 (Bit Score: 73; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 28375764 - 28375692
Alignment:
Q  98 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375764 agccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 28375692  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 29529144 - 29529072
Alignment:
Q  99 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29529144 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacggtcggcga 29529072  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 395523 - 395450
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    ||||| |||||||||| |||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||||    
T  395523 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcg 395450  T

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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 30440644 - 30440717
Alignment:
Q  99 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgaa 172  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30440644 gccgtcttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcgaa 30440717  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 45082821 - 45082748
Alignment:
Q  98 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 170  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  45082821 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 45082748  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 17955705 - 17955777
Alignment:
Q  99 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcga 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  17955705 gccgacttagctcagtggtagagcgcgtggcttttaaccacgtggtcgtgggtttgatccccacaatcggcga 17955777  T

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