View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_43 (Length: 204)
Name: NF3388_low_43
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 1047569 - 1047393
Alignment:
| Q |
12 |
atcatcagggcacacttatgatagaatttcaattccagagtggatagactctggtcaacacacttgtcttgaaagtgaacaaagactaatccacaatgct |
111 |
Q |
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| T |
1047569 |
atcatcagggcacacttatgatagaatttcaattccagagtgtatagactctggtcaacacacttgtcttgaaagtgaacaaagactaatccacaatgct |
1047470 |
T |
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| Q |
112 |
ttaataccaaattatgtattaaagagccttgttcaccaatggtgataggaaaataatgtctcagtgaatgaggcaac |
188 |
Q |
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| T |
1047469 |
ttaataccaaattatgtattaaagagccttgttcaccaatggtgataggaaaataatgtctcagtgaatgaggcaac |
1047393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 1023098 - 1023189
Alignment:
| Q |
12 |
atcatcagggcacacttatgatagaatttcaattccagagtggatagactctggtcaacacacttgtcttgaaagtgaacaaagactaatccaca |
106 |
Q |
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| T |
1023098 |
atcatcagggcacacttat---agaatttcaattgcagagtgtatagactctggtgaccacacttgtcctgaaagtaaacaaagactaattcaca |
1023189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 1020801 - 1020843
Alignment:
| Q |
22 |
cacacttatgatagaatttcaattccagagtggatagactctg |
64 |
Q |
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| T |
1020801 |
cacacttatgatagaatttcaactgcagagtggacagactctg |
1020843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 40642784 - 40642670
Alignment:
| Q |
70 |
cacacttgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagccttgttcaccaatggtgataggaaaataatg |
169 |
Q |
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| T |
40642784 |
cacacttgtcctgaaagtgaacaaagactaattcacaatgctttcatactaaattatatattaaagagccttgttcaccaatggtgctaggaaaataatg |
40642685 |
T |
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| Q |
170 |
tctcagtgaatgagg |
184 |
Q |
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| T |
40642684 |
tctcagtcaatgagg |
40642670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 35820712 - 35820886
Alignment:
| Q |
13 |
tcatcagggcacacttatgatagaatttcaattccagagtggatagactctggtcaacacacttgtcttgaaagtgaacaaagactaatccacaatgctt |
112 |
Q |
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|||||||| |||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||| | |||||| |||||||||||| |||| |||| |
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| T |
35820712 |
tcatcaggacacacttatgatagaatttcaattgcagaatggattaactctggtcaccacacttgtcctaaaagtggacaaagactaattcacactgctc |
35820811 |
T |
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| Q |
113 |
taataccaaattatgtattaaagagccttgttcaccaatggtgataggaaaataatgtctcagtgaatgaggcaa |
187 |
Q |
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|||||||||| |||| || |||||||||||||| |||||||| || ||||| |||||| | |||||||||||| |
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| T |
35820812 |
taataccaaactatgcgttgaagagccttgttcatcaatggtgctatgaaaacaatgtcaaaatgaatgaggcaa |
35820886 |
T |
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