View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_5 (Length: 469)
Name: NF3388_low_5
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 23322574 - 23322165
Alignment:
| Q |
22 |
ttgtcaaccactgaagacattttctactcactttgaaaatttcttgtaattacataacaaccatctaaagtagtagacaaacagatacatgtcatgtgaa |
121 |
Q |
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| T |
23322574 |
ttgtcaaccactgaagacattttctactcactttgaaaatttcttgtaattagataacaaccatctaaagtagtagacaaacagatacatgtcatgtgaa |
23322475 |
T |
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| Q |
122 |
ccgtaaaacaaaatctagatgnnnnnnnn--cagaggtctgcagttttttctttataaaaacatacaccatgagtgttgaaatttgaggatcaagcatta |
219 |
Q |
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| T |
23322474 |
ccgtaaaacaaaatctagatgttttttttttcagaggtctgcagttttttctgtataaa--catacaccatgagtgttgaaatttgaggatcaagcatta |
23322377 |
T |
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| Q |
220 |
gttaaatttaaggtaagtaccaagtaacatagattcttcatatattcattattttgttggnnnnnnngagacatgtggccatgtgagaatctaacttctt |
319 |
Q |
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| T |
23322376 |
gttaaagttaaggtaagtactaagtaacatagattcttcatatattcattattttgttggtttttttgagacgtgtggccatgtgagaat-ttacttctt |
23322278 |
T |
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| Q |
320 |
ccgttagactctactctttcttccgctagactctaccctattggttgcatatattcatttcgatgcctagctaaaagaactcgata-tttctgcattgcg |
418 |
Q |
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| T |
23322277 |
ccgctagactcta-------------------gtaccctattggttgcatatattcatttcgatgcctagctaaaagaacttgatattttctgcattgcg |
23322197 |
T |
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| Q |
419 |
agtttttctagcaaaggcagtactaagtaaca |
450 |
Q |
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| T |
23322196 |
agtttttctagcaaaggcagtactaagtaaca |
23322165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 337 - 436
Target Start/End: Complemental strand, 23322093 - 23321989
Alignment:
| Q |
337 |
ttcttccgctagactctaccctattggttgcatatattcatttcgatgcctagctaaaagaac-----tcgatatttctgcattgcgagtttttctagca |
431 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |
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| T |
23322093 |
ttcttctgctagactctaccctattggttgcatatattcacttcgatgcctagctaaaagaactcaattcgatatttctacattgcaagtttttctagca |
23321994 |
T |
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| Q |
432 |
aaggc |
436 |
Q |
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||||| |
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| T |
23321993 |
aaggc |
23321989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 23322121 - 23322088
Alignment:
| Q |
287 |
gagacatgtggccatgtgagaatctaacttcttc |
320 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
23322121 |
gagacgtgtggccatgtgagaatctaacttcttc |
23322088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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