View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388_low_6 (Length: 460)

Name: NF3388_low_6
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388_low_6
NF3388_low_6
[»] chr6 (3 HSPs)
chr6 (258-438)||(2714826-2715004)
chr6 (11-110)||(2714636-2714728)
chr6 (149-220)||(3880239-3880313)
[»] chr7 (5 HSPs)
chr7 (122-222)||(6726044-6726147)
chr7 (112-184)||(24324464-24324536)
chr7 (112-222)||(1321137-1321248)
chr7 (117-167)||(8745477-8745527)
chr7 (107-167)||(16828783-16828843)
[»] chr4 (3 HSPs)
chr4 (112-177)||(48098649-48098714)
chr4 (112-218)||(42719499-42719608)
chr4 (113-157)||(35948000-35948044)
[»] chr1 (2 HSPs)
chr1 (112-221)||(11439646-11439758)
chr1 (112-144)||(42374527-42374559)
[»] chr3 (1 HSPs)
chr3 (112-184)||(25648026-25648098)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 258 - 438
Target Start/End: Original strand, 2714826 - 2715004
Alignment:
Q  258 gtgttggactgatctttaatttgatgtgtcattgctaaatagaatttcatctactttataaatatcagaggnnnnnnngatttacccatacttcattttt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||       |||||||  |||||||||||||    
T  2714826 gtgttggactgatctttaatttgatgtgtcattgctaaatagaatttcatctgcttta--aatatcagaggaaaataagatttacatatacttcattttt 2714923  T
Q  358 agcaacttgattcttatttcattaacctaactctagaggcatttatgttcgaagtgtgtgggtatctaaatgttattgctg 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2714924 agcaacttgattcttatttcattaacctaactctagaggcatttatgttcgaagtttgtgggtatctaaatgttattgctg 2715004  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 2714636 - 2714728
Alignment:
Q  11 cacagacaatgtacatctatacgtcagaaagaaagnnnnnnnntacaatgtagatcaaaatattgtctcagccccaacagtaatacaagaaaattaagga 110  Q
    |||| ||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2714636 cacaaacaatgtacatctatacgtcagaaaaaaa-------aatacaatgtagatcaaaatattgtctcagccccaacagtaatacaagaaaattaagga 2714728  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 3880313 - 3880239
Alignment:
Q  149 ttgtttgtagtttcagttttatcgatctctattcgt---gagtagggatcttattgtttaaaaaaatttgttgtt 220  Q
    ||||||||| ||||||||| | || ||||| |||||   ||| |||||||| ||||||||| |||||||||||||    
T  3880313 ttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttgttgtt 3880239  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 6726147 - 6726044
Alignment:
Q  122 gggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcgt---gagtagggatcttattgtttaaaaaaatttgttg 218  Q
    |||||||||| ||||||| ||||||| ||||||||| | ||||||| | |||||||| |||||   ||| || |||||  |||||||| |||||||||||    
T  6726147 gggtgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttgttg 6726048  T
Q  219 tttc 222  Q
    ||||    
T  6726047 tttc 6726044  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 24324536 - 24324464
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcgt 184  Q
    ||||||||||||||||| |  ||||||||| ||||| ||||||||| | ||| ||| ||||||||||||||||    
T  24324536 gtttattttcgggtgtttcagctatatatgacgttttttgtttgtattctcactttcatcgatctctattcgt 24324464  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 1321137 - 1321248
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcg---tgagtagggatcttattgtttaaaa 208  Q
    ||||||||||||| |||||| ||||||| ||||  || |||||||| | ||||||| |||||||||  ||||   ||||||| ||| |  |||||||| |    
T  1321137 gtttattttcgggagttccgcctatatacggcg--tcgtgtttgtattctcagtttcatcgatctccgttcgtcttgagtagagatgtggttgtttaata 1321234  T
Q  209 aaatttgttgtttc 222  Q
    ||||||||||||||    
T  1321235 aaatttgttgtttc 1321248  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 8745477 - 8745527
Alignment:
Q  117 ttttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttt 167  Q
    ||||||||||||||| ||||||| ||||| |||||||| || |||||||||    
T  8745477 ttttcgggtgttccgcctatatacggcgtctcttgtttctattttcagttt 8745527  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 16828843 - 16828783
Alignment:
Q  107 aggaggtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttt 167  Q
    |||| |||||||||||||||||||| ||||||| ||||  | ||||||||| | |||||||    
T  16828843 aggatgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagttt 16828783  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 48098649 - 48098714
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctc 177  Q
    |||||||||||||||||||| |||||||  |||| | ||||||||| ||||||||| | |||||||    
T  48098649 gtttattttcgggtgttccgcctatatactgcgtcttttgtttgtattttcagtttcaccgatctc 48098714  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 42719499 - 42719608
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcg---tgagtagggatcttattgtttaaaa 208  Q
    |||||||||| ||| |||||  |||||| ||||| | ||||||||| | ||||||| | || ||||||||||   |||| |||||| | ||||||||| |    
T  42719499 gtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaata 42719598  T
Q  209 aaatttgttg 218  Q
    ||||||||||    
T  42719599 aaatttgttg 42719608  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 35948044 - 35948000
Alignment:
Q  113 tttattttcgggtgttccgtctatatatggcgtttcttgtttgta 157  Q
    |||||||||||||||||||  |||||||||||| | |||||||||    
T  35948044 tttattttcgggtgttccgcttatatatggcgtcttttgtttgta 35948000  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 11439758 - 11439646
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcg---tgagtagggatcttattgtttaaaa 208  Q
    |||||||||||| ||||||||||||||||| ||  | ||||||||| | ||| ||| | |||||| | ||||   |||| || |||||  |||||||| |    
T  11439758 gtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgtttaata 11439659  T
Q  209 aaatttgttgttt 221  Q
    |||||||||||||    
T  11439658 aaatttgttgttt 11439646  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 42374527 - 42374559
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcg 144  Q
    |||||||||||||||||||| ||||||||||||    
T  42374527 gtttattttcgggtgttccgcctatatatggcg 42374559  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 25648026 - 25648098
Alignment:
Q  112 gtttattttcgggtgttccgtctatatatggcgtttcttgtttgtagtttcagttttatcgatctctattcgt 184  Q
    ||||||||||||||||||||||||||||  |||  | ||||||||| | | ||||| | |||||||| |||||    
T  25648026 gtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgt 25648098  T

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