View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_7 (Length: 456)
Name: NF3388_low_7
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 33234315 - 33233883
Alignment:
| Q |
17 |
catgaacatgtggtggtagaaagtcatcacagtcttcactctctgaatcactatgatctctaatcatagtagcacaatgagagcattttgtgggcttcca |
116 |
Q |
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| T |
33234315 |
catgaacatgtggtggtagaaaatcatcacaatcttcactctctgaatcactatgatctctaatcatactagcacaatgagagcattttgtgggcttcca |
33234216 |
T |
|
| Q |
117 |
aatcccagttttcagtacttcatgaaacatggaatgtaatgctttagcagggtgttgagaagggccatgcactgtaatatccaaaccaacttcacttgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33234215 |
aatcccagttttcagtacttcatgaaacatggaatgtaatgctttagcagggtgttgagaagggccatgcacggtaatatccaaaccaacttcacttgat |
33234116 |
T |
|
| Q |
217 |
ggttgaatcattacaatcatagaaagaccaatatctattttataactaaacaaatttctaatactaacagcataatagtgtgctacagttaccttgcaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234115 |
ggttgaatcattacaatcatagaaagaccaatatctattttataactaaacaaatttctaatactaacagcataatagtgtgctacagttaccttgcaag |
33234016 |
T |
|
| Q |
317 |
gcttttcagcatttccactctttctcatttcttccaacacaagaaaacctcttctgcttccactcccataaagataaacacatgtttccataacataacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234015 |
gcttttcagcatttccactctttctcatttcttccaacacaagaaaacctcttctgcttccactcccataaagataaacacatgtttccataacataacc |
33233916 |
T |
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| Q |
417 |
cgatgcattagtagtgctgttcctcctttgctt |
449 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
33233915 |
cgatgcattagtagtgctgttactcctttgctt |
33233883 |
T |
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