View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_low_9 (Length: 419)
Name: NF3388_low_9
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 40750316 - 40749932
Alignment:
| Q |
12 |
atcatcaagcagtattttttgattgaaattgtgaatttctttttcatgattttccacttcatattgaaatgaataattagattgtaaagtaacattgttt |
111 |
Q |
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| T |
40750316 |
atcatcaagcagtattttttgattgaaattgtgaatttctttttcatgattttccacttcatattgaaatgaataattagattgtaaagtaacattgttt |
40750217 |
T |
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| Q |
112 |
ccaatgaatctactagacaaatcaaagagagaaaatgttttccaatacaattgaaaaacaagtatagtaacaagacacacaagaacaggtaagagatgtc |
211 |
Q |
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| T |
40750216 |
ccaatgaatctactagacaaatccaagagagaaaatgttttccaatacgattgaaaaacaagtatagtaacaagacacacaagaacaggtaagagatgtc |
40750117 |
T |
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| Q |
212 |
tgaatctgacataaaaagataaacccannnnnnnnnnacacaaaactcaaatggttggtgacttcaaactaaactaaaacattcatcattgcaatattga |
311 |
Q |
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| T |
40750116 |
taaatctgacataaaaagataaaccca-ttttttttcacacaaaactcaattggttggtgacttcaaactaaactaaaacattcatcattgcaatattga |
40750018 |
T |
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| Q |
312 |
gctaaaaatcctgagccaaaacctgaaaaggtgattaaattcagttacatatagtagttagtagaagtagaactagaagaaactaaagtaaa |
403 |
Q |
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| T |
40750017 |
gctaaaaatcctgagccaaaacctgaaaaggtgattaaattcagttacatatagtagtt------agtagaactagaagaaactaaagtaaa |
40749932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 5255299 - 5255514
Alignment:
| Q |
22 |
agtattttttgattgaaattgtgaatttctttttcatgattttccacttcatattgaaatgaataattagattgtaaagtaacattgtttccaatgaatc |
121 |
Q |
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| T |
5255299 |
agtatttttttattgaaagtgtgaatttctttttcatgattttccacttcatattgtagtgaattaccagactgaaaa-taacattgtttccaataaatc |
5255397 |
T |
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| Q |
122 |
tactagacaaatcaaagagagaaaatgttttccaatacaattgaaaaacaagtatagtaacaagacacacaagaacaggtaagagatgtctgaatctgac |
221 |
Q |
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| T |
5255398 |
tactagacaaatccaagagagaaaacattttccagtaagattggaaaacaagtacagtagcaacaaacacaagaacaagtaagagatgtctaaatttgat |
5255497 |
T |
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| Q |
222 |
ataaaaagataaaccca |
238 |
Q |
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| T |
5255498 |
ataaaaagatataccca |
5255514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 5255529 - 5255596
Alignment:
| Q |
300 |
ttgcaatattgagctaaaaatcctgagccaaaacct--gaaaaggtgattaaattcagttacatatag |
365 |
Q |
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| T |
5255529 |
ttgcaatattgtgttaaaaatcatgagccaaaacctaaaaaaaggtgagtaaattaagttacatatag |
5255596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 54434435 - 54434565
Alignment:
| Q |
102 |
aacattgtttccaatgaatctactagacaaatcaaagagagaaaatgttttccaatacaattgaaaaacaagtatagtaacaagacacacaagaacaggt |
201 |
Q |
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| T |
54434435 |
aacattgtttccaataaatctactagacaaatccaagagagaaaatgttttccagtaagattggaaaacaaatacagtagcaacaaacacaagaacaagt |
54434534 |
T |
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| Q |
202 |
aagagatgtctgaatctgacataaaaagata |
232 |
Q |
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| T |
54434535 |
tagagatgtctaaatctgatataaaaagata |
54434565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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