View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_high_2 (Length: 449)
Name: NF3389_high_2
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 38851651 - 38851225
Alignment:
| Q |
1 |
aggatagaaatggtattcacaaatactaactgctcatttacttgtctcgtcgtttttcgtcgccactttttcgtaccagagcaatttccgacattaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
38851651 |
aggatagaaatggtattcacaaatactaactgctcatttacttgtctcgttgtttttcgtcgccactttttcgtaccagagtaatttctgaaattaaatc |
38851552 |
T |
|
| Q |
101 |
atcatagaaaatcctagatgaagacataggacatgcatgtttactagtttatactattagcat---aggctgactaatctatannnnnnnn---aataaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
38851551 |
atcatagaaaatcctagatgaagacataggacatgcatgttaactagtttatactattagcattataggctgactaatctatatttttttttttaataaa |
38851452 |
T |
|
| Q |
195 |
cttattataggtacaaaacatactagggtaatttatactaattagtttttt-gttttctttcattctttgctcaacacaatatatatgtattctcttggt |
293 |
Q |
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| T |
38851451 |
cttattataggtacaaagcatactagggtaatttatactatttagtttttttgttttctttcattctttgctcaacacaatatatatgtattctcttggt |
38851352 |
T |
|
| Q |
294 |
tcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattgaggtcaaagtaaagcaa |
393 |
Q |
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| T |
38851351 |
tcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattaaggtcaaagtaaagcaa |
38851252 |
T |
|
| Q |
394 |
agaaagtttctttctcaaacataatta |
420 |
Q |
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| T |
38851251 |
ataaagtctctttctcaaccataatta |
38851225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 38840622 - 38840679
Alignment:
| Q |
363 |
tatttttacaattgaggtcaaagtaaagcaaagaaagtttctttctcaaacataatta |
420 |
Q |
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||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
38840622 |
tatttctacatttgagatcaaagtaaagcaaagaaagtttcttgctcaaccataatta |
38840679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 38861137 - 38861178
Alignment:
| Q |
362 |
gtatttttacaattgaggtcaaagtaaagcaaagaaagtttc |
403 |
Q |
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| T |
38861137 |
gtatttttacatttgaggtcaaagtaaagcaaagaaagtttc |
38861178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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