View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_high_5 (Length: 364)
Name: NF3389_high_5
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 5374734 - 5375081
Alignment:
| Q |
1 |
caaaatcagctagagatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagcttatttggtttagcttctgg |
100 |
Q |
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| T |
5374734 |
caaaatcagctagagatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagcttatttggtttagcttctgg |
5374833 |
T |
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| Q |
101 |
tacagcaagaggcatggctactgaagcccgtgtcgcggcttacaaggtgtgctggcttagtggttgtttcacttcagacatagctgctggaatggataaa |
200 |
Q |
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| T |
5374834 |
tacagcaagaggcatggctactgaagcgcgtgtcgcagcttacaaggtgtgctggcttagtggttgtttcacttcagacatagctgctggaatggataaa |
5374933 |
T |
|
| Q |
201 |
gctatagaagatggtgttaacatcttatctatgtcgattggtggtagcataatggattactacagagacataattgcaattggtgctttcacagcaatgt |
300 |
Q |
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| T |
5374934 |
gctatagaagatggtgttaacatcttatctatgtcaattggtggtagcataatggattactacagagacataattgcaattggtgctttcacagcaatgt |
5375033 |
T |
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| Q |
301 |
ctcatggaattctagtttcatcttcagcaggaaatggtggaccaagtg |
348 |
Q |
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| T |
5375034 |
ctcatggaattctagtttcatcttcagcaggaaatggtggaccaagtg |
5375081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 47367826 - 47367597
Alignment:
| Q |
15 |
gatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagcttatttggtttagcttctggtacagcaagaggca |
114 |
Q |
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|||||||| || |||||||||||||| | ||| |||||||||||||||| || |||| ||| ||| | || ||||| |||||||| ||||||| ||||| |
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| T |
47367826 |
gatgatgacgggcatggaagtcacacctcaactacagcagcaggttctgcagttgcaggagcaagcctcttcggttttgcttctgggacagcaaaaggca |
47367727 |
T |
|
| Q |
115 |
tggctactgaagcccgtgtcgcggcttacaaggtgtgctggcttagtggttgtttcacttcagacatagctgctggaatggataaagctatagaagatgg |
214 |
Q |
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||||||| |||| || || || |||||||| ||||| |||||| ||||||| || || |||||||||||||||| || || || || || ||||| || |
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| T |
47367726 |
tggctacacaagctcgagtggccgcttacaaagtgtgttggcttggtggttgctttacatcagacatagctgctgcgattgacaaggccatcgaagacgg |
47367627 |
T |
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| Q |
215 |
tgttaacatcttatctatgtcgattggtgg |
244 |
Q |
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||||||| || | |||||||| |||||||| |
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| T |
47367626 |
tgttaacgtcctctctatgtctattggtgg |
47367597 |
T |
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