View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_high_7 (Length: 238)
Name: NF3389_high_7
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 54142262 - 54142059
Alignment:
| Q |
18 |
atttctacccatcatcatgtcttcagtggtcaactattaaccagctgaacaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacct |
117 |
Q |
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| T |
54142262 |
atttctacccatcatcatgtcttcagtgatcaactattaaccagctgaacaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacct |
54142163 |
T |
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| Q |
118 |
aaggcataattaaccagtaatctcccacagaaagattccagccggataagnnnnnnnncattgaattggagtgaannnnnnnataacactatcatattta |
217 |
Q |
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| T |
54142162 |
aaggcataattaaccagtaatctcccacagaaagattccagccggataag-aaaaaaacattgaattggagtgaatttttttataacactatcatattta |
54142064 |
T |
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| Q |
218 |
gccta |
222 |
Q |
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||||| |
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| T |
54142063 |
gccta |
54142059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 54129137 - 54129101
Alignment:
| Q |
122 |
cataattaaccagtaatctcccacagaaagattccag |
158 |
Q |
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| T |
54129137 |
cataattaaccagtaatctcccacaaaaagattccag |
54129101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 54129262 - 54129221
Alignment:
| Q |
35 |
tgtcttcagtggtcaactattaaccagctgaacaaaatatgt |
76 |
Q |
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| T |
54129262 |
tgtcttcagtgctcagctattaaacagctgaacaaaatatgt |
54129221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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