View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_high_8 (Length: 226)
Name: NF3389_high_8
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44424686 - 44424553
Alignment:
| Q |
1 |
tcatcatcaactatcaaacaaaaacacctagcagagctctttatgtaagtagaactctcaactcttaatctacaacaaatgacataacctcctatgcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
44424686 |
tcatcatcaactatcaaacaaaaacacctagcagagttctttatgtaagtagaactctcaactcttaatctacaacaattgacataacctcctatacaaa |
44424587 |
T |
|
| Q |
101 |
atgtttgagggggaggggtgaaatctaatatcta |
134 |
Q |
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| T |
44424586 |
atgtttgagggggaggggtgaaatctaatatcta |
44424553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 44424539 - 44424505
Alignment:
| Q |
192 |
atgaatgaaataccaaaccaaaacattatgctacc |
226 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44424539 |
atgaatgaaataccaaaccaaaacattatgctacc |
44424505 |
T |
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