View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_low_3 (Length: 429)
Name: NF3389_low_3
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 10011624 - 10011224
Alignment:
| Q |
17 |
ttaaccacagacacgtgaaggacatcacacacaaagttttaaattgcagttgtggttgcgaccattgtaattctcagttttgtgattattgcaacacgaa |
116 |
Q |
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| T |
10011624 |
ttaaccacagacacgtgaaggacatcacacaca--gttttaaattgcagttgtggttgcgaccattgtaattctcagttttgcgattattgcaacacgaa |
10011527 |
T |
|
| Q |
117 |
tttatttgtatgtcgcaaccacgagtcaattcgtttgatacatgaaactgatgagattgtcatgacttgtctttgttggttgtttttaagaccaaatata |
216 |
Q |
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| T |
10011526 |
tttatttgtatgtcgcaaccacgagtcaattcgtttgatacatgaaactgatgagattgtcatgacttgtctttgttggttgtttttaagaccaaatata |
10011427 |
T |
|
| Q |
217 |
agtcacccacgtttctacttcatatatctcatcttacaaattttgcttaatgttcttcgttcatattcattcactcgtgcattgatcgattagctcaaat |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10011426 |
agtcacccacgtttctacttcatatgtctcatcttacaaattttgcttattgttcttcgttcatatttattcactcgtgcattgatcgattagctcaaat |
10011327 |
T |
|
| Q |
317 |
ttttattgtgtcatatcacattcaattgaacgagggaacccatgcatctgattaagacgccttagagcatcaaatcaatgagaagttattttctttatga |
416 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
10011326 |
ttttattgtgtcatatcacattcaattggacgagggaacccatgcatctgattaagacgccttagagcatcaaatcaatgagaagttatttcctttatca |
10011227 |
T |
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| Q |
417 |
tga |
419 |
Q |
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| T |
10011226 |
tga |
10011224 |
T |
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