View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3389_low_6 (Length: 317)
Name: NF3389_low_6
Description: NF3389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3389_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 37329155 - 37328851
Alignment:
| Q |
1 |
ttagtgttatggagtctttagaagttgaaagtttaatatcgtccacatttacattgaaagtttgagctatagggggcttctaagacatctactttgttag |
100 |
Q |
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| T |
37329155 |
ttagtgttatggagtctttagaagttgaaagtttaatatcgtccacatttacattgaaagtttgagctatagggggcttctaagacatctactttgttag |
37329056 |
T |
|
| Q |
101 |
gaccaccatatatggggggaaagcttttaaattttccttttcaat--gttgagaatttcactgaagataccaaaccacaagctattttcaaggtcatatt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37329055 |
gaccaccatatatggggggaaagcttttaaattttccttttcaataagttgagaatttcactggagataccaaaccacaagctattttcaaggtcatatt |
37328956 |
T |
|
| Q |
199 |
tgccctaaatagttagggcattgtggtcctttcgagatagcaattgttgacacaacgaagatatattagagttagaccatttacaaggcatcgtgtccaa |
298 |
Q |
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| T |
37328955 |
taccctaaatagttagggcattgtggtccttttgagatagcaattgttgacacaacaaagatattttagagttagaccatttacaaggcatcgtgccaaa |
37328856 |
T |
|
| Q |
299 |
catcc |
303 |
Q |
| |
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||||| |
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| T |
37328855 |
catcc |
37328851 |
T |
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