View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3390_high_3 (Length: 227)

Name: NF3390_high_3
Description: NF3390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3390_high_3
NF3390_high_3
[»] chr3 (3 HSPs)
chr3 (20-116)||(41454062-41454158)
chr3 (148-211)||(41457673-41457736)
chr3 (104-153)||(41454166-41454215)
[»] chr4 (3 HSPs)
chr4 (104-160)||(28751911-28751967)
chr4 (67-159)||(32737082-32737173)
chr4 (148-211)||(28752034-28752098)
[»] chr1 (1 HSPs)
chr1 (76-159)||(25060735-25060817)
[»] scaffold0020 (1 HSPs)
scaffold0020 (163-211)||(138718-138767)
[»] chr5 (1 HSPs)
chr5 (148-207)||(34826596-34826655)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 41454062 - 41454158
Alignment:
Q  20 aacattaccctccttcatgtgatgatacaaccaataatttttaaactaattttgcactcgtttggttgtacgattagaaacctcaaacgtgagttta 116  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  41454062 aacattaccctccttcatgtcatgatacaaccaataatttttaaactaattaagcactcgttaggttgtacgattagaaacctcaaacgtgagttta 41454158  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 41457673 - 41457736
Alignment:
Q  148 ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattttcat 211  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41457673 ttcaacttgattagttattttaataataactgctcccaatatccatgtttatccttattttcat 41457736  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 41454166 - 41454215
Alignment:
Q  104 aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaa 153  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41454166 aaacgtgagtttattaaaaaatacaagtgtttgggtaaccatttttcaaa 41454215  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 28751911 - 28751967
Alignment:
Q  104 aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatta 160  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  28751911 aaacgtgagtttattagaaaataaaagtgtttgggtaaccatttttcaaattgatta 28751967  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 32737173 - 32737082
Alignment:
Q  67 aattttgcactcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt 159  Q
    ||||| |||||||||||||||| || ||  ||||||||||||||||||| ||| |||| | |||||||||||||  ||||||| |||||||||    
T  32737173 aatttagcactcgtttggttgtgcgtttgcaaacctcaaacgtgagtttgtta-aaaaaaaaagtgtttgggtactcattttttaaattgatt 32737082  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 28752034 - 28752098
Alignment:
Q  148 ttcaaattgattagatattttaataatagctgctcccaa-tatccatgtttatctttattttcat 211  Q
    ||||| |||||| | ||||||||||||||||||||| || | |||||||||||| ||| ||||||    
T  28752034 ttcaatttgatttgttattttaataatagctgctcctaactttccatgtttatccttactttcat 28752098  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 25060735 - 25060817
Alignment:
Q  76 ctcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt 159  Q
    ||||||| ||||| || ||| || |||||||||||||||| ||| |||||| |||||||||| |||||| |||| |||||||||    
T  25060735 ctcgttttgttgtgcgtttacaagcctcaaacgtgagtttgttaaaaaata-aagtgtttggataaccaatttttaaattgatt 25060817  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 138767 - 138718
Alignment:
Q  163 tattttaataatagctgctcccaa-tatccatgtttatctttattttcat 211  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  138767 tattttaataatagctgctcccaattttccatgtttatccttattttcat 138718  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 34826655 - 34826596
Alignment:
Q  148 ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattt 207  Q
    ||||| |||||| | ||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  34826655 ttcaacttgatttgttattttaatgatagctgctcccaatttccttgtttatccttattt 34826596  T

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