View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3390_low_3 (Length: 236)

Name: NF3390_low_3
Description: NF3390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3390_low_3
NF3390_low_3
[»] chr1 (7 HSPs)
chr1 (34-162)||(50071225-50071358)
chr1 (197-236)||(10478224-10478263)
chr1 (197-236)||(16343112-16343151)
chr1 (197-236)||(16526124-16526163)
chr1 (197-236)||(32589436-32589475)
chr1 (197-236)||(40375262-40375301)
chr1 (198-236)||(47930619-47930657)
[»] chr3 (14 HSPs)
chr3 (197-236)||(48546257-48546296)
chr3 (197-236)||(5641561-5641600)
chr3 (197-236)||(10349484-10349523)
chr3 (197-236)||(32429831-32429870)
chr3 (197-236)||(33225295-33225334)
chr3 (197-236)||(48722328-48722367)
chr3 (197-236)||(50727191-50727230)
chr3 (197-236)||(50785618-50785657)
chr3 (198-236)||(15975236-15975274)
chr3 (197-235)||(15975355-15975393)
chr3 (198-236)||(47098816-47098854)
chr3 (198-236)||(50659674-50659712)
chr3 (52-100)||(3901169-3901217)
chr3 (59-99)||(48893794-48893834)
[»] chr2 (9 HSPs)
chr2 (197-236)||(13606191-13606230)
chr2 (197-236)||(2643781-2643820)
chr2 (197-236)||(5112798-5112837)
chr2 (197-236)||(13773484-13773523)
chr2 (197-236)||(16040325-16040364)
chr2 (197-236)||(36182726-36182765)
chr2 (197-236)||(41298546-41298585)
chr2 (197-236)||(43936785-43936824)
chr2 (198-236)||(40688587-40688625)
[»] scaffold0394 (1 HSPs)
scaffold0394 (197-236)||(1346-1385)
[»] scaffold0254 (1 HSPs)
scaffold0254 (197-236)||(1401-1440)
[»] chr8 (8 HSPs)
chr8 (197-236)||(94458-94497)
chr8 (197-236)||(7763886-7763925)
chr8 (197-236)||(11875970-11876009)
chr8 (197-236)||(11890977-11891016)
chr8 (197-236)||(32258091-32258130)
chr8 (197-236)||(34413146-34413185)
chr8 (198-236)||(32719556-32719594)
chr8 (197-235)||(35818144-35818182)
[»] chr7 (5 HSPs)
chr7 (197-236)||(3766895-3766934)
chr7 (197-236)||(28501241-28501280)
chr7 (197-236)||(32676889-32676928)
chr7 (198-236)||(1563687-1563725)
chr7 (198-236)||(21388599-21388637)
[»] chr6 (4 HSPs)
chr6 (197-236)||(216290-216329)
chr6 (197-235)||(28222947-28222985)
chr6 (52-125)||(13087577-13087650)
chr6 (197-230)||(30504569-30504602)
[»] chr5 (4 HSPs)
chr5 (197-236)||(11774406-11774445)
chr5 (197-236)||(17330871-17330910)
chr5 (197-236)||(36888342-36888381)
chr5 (203-235)||(8282830-8282862)
[»] chr4 (7 HSPs)
chr4 (197-236)||(626929-626968)
chr4 (197-236)||(8965178-8965217)
chr4 (197-236)||(23778772-23778811)
chr4 (197-236)||(30057306-30057345)
chr4 (200-236)||(1457968-1458004)
chr4 (200-236)||(47890779-47890815)
chr4 (200-236)||(51791336-51791372)
[»] scaffold0038 (1 HSPs)
scaffold0038 (197-235)||(23445-23483)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 50071225 - 50071358
Alignment:
Q  34 ccggatataacatgaaatataagtat------gtttaagtaaatgatatatattttaccattgaaattaatactactaattactttattaatattcgtgt 127  Q
    ||||| ||||||||||||||||||||      |||||||||||||| | ||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  50071225 ccggacataacatgaaatataagtataatgatgtttaagtaaatgacacatattttacaattaaaattaatactattaattactttattaatattcgtgt 50071324  T
Q  128 aaaacttaaattgaacacttaatataaagcagaga 162  Q
    |||||| |||||| || ||||||||||| ||||||    
T  50071325 aaaactcaaattg-acgcttaatataaaacagaga 50071358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 10478263 - 10478224
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  10478263 gtcaagtagtttagtggttagagctcacacaatttaattg 10478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 16343151 - 16343112
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  16343151 gtcaagtagcttagtggctagagctcacacaatttaattg 16343112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 16526124 - 16526163
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  16526124 gtcaagtagcctagtggttagagctcacacaatttaattg 16526163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 32589436 - 32589475
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  32589436 gtcaagtagcctagtggttagagctcacacaatttaattg 32589475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 40375262 - 40375301
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  40375262 gtcaagtagcctagtggttagagctcacacaatttaattg 40375301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 47930619 - 47930657
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  47930619 tcaagtagcctagtggttagagctcacacaatttaattg 47930657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 48546296 - 48546257
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48546296 gtcaagtagcttagtggttagagctcacacaatttaattg 48546257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 5641561 - 5641600
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  5641561 gtcaagtagcttagtggctagagctcacacaatttaattg 5641600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 10349523 - 10349484
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  10349523 gtcaagtagcctagtggttagagctcacacaatttaattg 10349484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 32429870 - 32429831
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  32429870 gtcaagtagcctagtggttagagctcacacaatttaattg 32429831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 33225295 - 33225334
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  33225295 gtcaagtagcttagtggctagagctcacacaatttaattg 33225334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 48722367 - 48722328
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  48722367 gtcaagtagcttagtggctagagctcacacaatttaattg 48722328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 50727191 - 50727230
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  50727191 gtcaagtagcttagtggctagagctcacacaatttaattg 50727230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 50785657 - 50785618
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  50785657 gtcaagtagcttagtggctagagctcacacaatttaattg 50785618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 15975274 - 15975236
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  15975274 tcaagtagcctagtggttagagctcacacaatttaattg 15975236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 15975355 - 15975393
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaatt 235  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  15975355 gtcaagtagcctagtggttagagctcacacaatttaatt 15975393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 47098854 - 47098816
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  47098854 tcaagtagcttagtggctagagctcacacaatttaattg 47098816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 50659712 - 50659674
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  50659712 tcaagtagcttagtggctagagctcacacaatttaattg 50659674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 3901217 - 3901169
Alignment:
Q  52 ataagtatgtttaagtaaatgatatatattttaccattgaaattaatac 100  Q
    ||||| |||||| ||||||||||||  |||||| |||||||||||||||    
T  3901217 ataagaatgttttagtaaatgatattaattttatcattgaaattaatac 3901169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 48893794 - 48893834
Alignment:
Q  59 tgtttaagtaaatgatatatattttaccattgaaattaata 99  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  48893794 tgttttagcaaatgatatatattttaccattaaaattaata 48893834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 13606191 - 13606230
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  13606191 gtcaagtagcttagtggttagagctcacacaatttaattg 13606230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 2643820 - 2643781
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  2643820 gtcaagtagcttagtggctagagctcacacaatttaattg 2643781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 5112798 - 5112837
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  5112798 gtcaagtagcctagtggttagagctcacacaatttaattg 5112837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 13773523 - 13773484
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  13773523 gtcaagtagcctagtggttagagctcacacaatttaattg 13773484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 16040364 - 16040325
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  16040364 gtcaagtaacttagtggttagagctcacacaatttaattg 16040325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 36182765 - 36182726
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  36182765 gtcaagtagcctagtggttagagctcacacaatttaattg 36182726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 41298585 - 41298546
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  41298585 gtcaagtagtttagtggttagagctcacacaatttaattg 41298546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 43936824 - 43936785
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  43936824 gtcaagtagtttagtggttagagctcacacaatttaattg 43936785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 40688587 - 40688625
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  40688587 tcaagtagcctagtggttagagctcacacaatttaattg 40688625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 1385 - 1346
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  1385 gtcaagtagcttagtggctagagctcacacaatttaattg 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 1440 - 1401
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  1440 gtcaagtagcttagtggctagagctcacacaatttaattg 1401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 94458 - 94497
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  94458 gtcaagtagcctagtggttagagctcacacaatttaattg 94497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 7763886 - 7763925
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  7763886 gtcaagtagcttagtggctagagctcacacaatttaattg 7763925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 11876009 - 11875970
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  11876009 gtcaagtagcctagtggttagagctcacacaatttaattg 11875970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 11891016 - 11890977
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  11891016 gtcaagtagcctagtggttagagctcacacaatttaattg 11890977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 32258130 - 32258091
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  32258130 gtcaagtagtttagtggttagagctcacacaatttaattg 32258091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 34413185 - 34413146
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  34413185 gtcaagtagcctagtggttagagctcacacaatttaattg 34413146  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 32719556 - 32719594
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  32719556 tcaagtagcctagtggttagagctcacacaatttaattg 32719594  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 35818182 - 35818144
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaatt 235  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35818182 gtcaagtagcctagtggttagagctcacacaatttaatt 35818144  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 3766934 - 3766895
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  3766934 gtcaagtagcctagtggttagagctcacacaatttaattg 3766895  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 28501280 - 28501241
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  28501280 gtcaagtagtttagtggttagagctcacacaatttaattg 28501241  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 32676889 - 32676928
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  32676889 gtcaagtagcttagtggctagagctcacacaatttaattg 32676928  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 1563687 - 1563725
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  1563687 tcaagtagcctagtggttagagctcacacaatttaattg 1563725  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 21388637 - 21388599
Alignment:
Q  198 tcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  21388637 tcaagtagcttagtggctagagctcacacaatttaattg 21388599  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 216329 - 216290
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  216329 gtcaagtagcctagtggttagagctcacacaatttaattg 216290  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 28222985 - 28222947
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaatt 235  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  28222985 gtcaagtagcctagtggttagagctcacacaatttaatt 28222947  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 13087577 - 13087650
Alignment:
Q  52 ataagtatgtttaagtaaatgatatatattttaccattgaaattaatactactaattactttattaatattcgt 125  Q
    ||||| |||||| ||||||||||||  |||||||||||||||| || || | |||| ||||| |||||| ||||    
T  13087577 ataaggatgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcactttcttaataatcgt 13087650  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 30504602 - 30504569
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatt 230  Q
    |||||||||||||| |||||||||||||||||||    
T  30504602 gtcaagtagcttagtggttagagctcacacaatt 30504569  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 11774406 - 11774445
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  11774406 gtcaagtagcctagcggctagagctcacacaatttaattg 11774445  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 17330910 - 17330871
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  17330910 gtcaagtaacatagcggttagagctcacacaatttaattg 17330871  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 36888342 - 36888381
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  36888342 gtcaagtagcttagtggctagagctcacacaatttaattg 36888381  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 8282862 - 8282830
Alignment:
Q  203 tagcttagcggttagagctcacacaatttaatt 235  Q
    |||||||| ||||||||||||||||||||||||    
T  8282862 tagcttagtggttagagctcacacaatttaatt 8282830  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 626929 - 626968
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  626929 gtcaagtagcctagtggttagagctcacacaatttaattg 626968  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 8965217 - 8965178
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  8965217 gtcaagtagcctagtggttagagctcacacaatttaattg 8965178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 23778772 - 23778811
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  23778772 gtcaagtagtttagtggttagagctcacacaatttaattg 23778811  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 30057345 - 30057306
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaattg 236  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  30057345 gtcaagtagcctagtggttagagctcacacaatttaattg 30057306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 1457968 - 1458004
Alignment:
Q  200 aagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  1457968 aagtagcctagtggttagagctcacacaatttaattg 1458004  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 47890815 - 47890779
Alignment:
Q  200 aagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  47890815 aagtagcctagtggttagagctcacacaatttaattg 47890779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 51791372 - 51791336
Alignment:
Q  200 aagtagcttagcggttagagctcacacaatttaattg 236  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  51791372 aagtagcctagtggttagagctcacacaatttaattg 51791336  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 23483 - 23445
Alignment:
Q  197 gtcaagtagcttagcggttagagctcacacaatttaatt 235  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  23483 gtcaagtagcctagtggttagagctcacacaatttaatt 23445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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