View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3390_low_4 (Length: 227)
Name: NF3390_low_4
Description: NF3390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3390_low_4 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 41454062 - 41454158
Alignment:
| Q |
20 |
aacattaccctccttcatgtgatgatacaaccaataatttttaaactaattttgcactcgtttggttgtacgattagaaacctcaaacgtgagttta |
116 |
Q |
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| T |
41454062 |
aacattaccctccttcatgtcatgatacaaccaataatttttaaactaattaagcactcgttaggttgtacgattagaaacctcaaacgtgagttta |
41454158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 41457673 - 41457736
Alignment:
| Q |
148 |
ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattttcat |
211 |
Q |
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| T |
41457673 |
ttcaacttgattagttattttaataataactgctcccaatatccatgtttatccttattttcat |
41457736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 41454166 - 41454215
Alignment:
| Q |
104 |
aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaa |
153 |
Q |
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| T |
41454166 |
aaacgtgagtttattaaaaaatacaagtgtttgggtaaccatttttcaaa |
41454215 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 28751911 - 28751967
Alignment:
| Q |
104 |
aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatta |
160 |
Q |
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| T |
28751911 |
aaacgtgagtttattagaaaataaaagtgtttgggtaaccatttttcaaattgatta |
28751967 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 32737173 - 32737082
Alignment:
| Q |
67 |
aattttgcactcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt |
159 |
Q |
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| T |
32737173 |
aatttagcactcgtttggttgtgcgtttgcaaacctcaaacgtgagtttgtta-aaaaaaaaagtgtttgggtactcattttttaaattgatt |
32737082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 28752034 - 28752098
Alignment:
| Q |
148 |
ttcaaattgattagatattttaataatagctgctcccaa-tatccatgtttatctttattttcat |
211 |
Q |
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| T |
28752034 |
ttcaatttgatttgttattttaataatagctgctcctaactttccatgtttatccttactttcat |
28752098 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 25060735 - 25060817
Alignment:
| Q |
76 |
ctcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt |
159 |
Q |
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| T |
25060735 |
ctcgttttgttgtgcgtttacaagcctcaaacgtgagtttgttaaaaaata-aagtgtttggataaccaatttttaaattgatt |
25060817 |
T |
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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 138767 - 138718
Alignment:
| Q |
163 |
tattttaataatagctgctcccaa-tatccatgtttatctttattttcat |
211 |
Q |
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| T |
138767 |
tattttaataatagctgctcccaattttccatgtttatccttattttcat |
138718 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 34826655 - 34826596
Alignment:
| Q |
148 |
ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattt |
207 |
Q |
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| T |
34826655 |
ttcaacttgatttgttattttaatgatagctgctcccaatttccttgtttatccttattt |
34826596 |
T |
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