View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_10 (Length: 348)
Name: NF3391_high_10
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_10 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 44624035 - 44623720
Alignment:
| Q |
22 |
gtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44624035 |
gtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctc |
44623936 |
T |
|
| Q |
122 |
ttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattca |
221 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
44623935 |
ttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattca |
44623836 |
T |
|
| Q |
222 |
aactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44623835 |
aactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgac |
44623736 |
T |
|
| Q |
322 |
catcaagtatattctt |
337 |
Q |
| |
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|||||||||||||||| |
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| T |
44623735 |
catcaagtatattctt |
44623720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 44614844 - 44614563
Alignment:
| Q |
22 |
gtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctc |
121 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||| |||| ||| |
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| T |
44614844 |
gtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctc |
44614745 |
T |
|
| Q |
122 |
ttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattca |
221 |
Q |
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| |||||| |||||| | | |||||| | ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44614744 |
tacctttgtttcaaacatt---ttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattca |
44614648 |
T |
|
| Q |
222 |
aactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa |
306 |
Q |
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|| ||||||||||| |||||||||| | | |||||||||||||||||| || |||||||| ||||||||||||| ||| |||| |
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| T |
44614647 |
aattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa |
44614563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
| Q |
156 |
ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt |
255 |
Q |
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||||||||||| |||||||| ||||||||| ||||| || | ||||| ||||||||||||||| | |||||| || | |||||||||| | | |||| |
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| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt |
39473736 |
T |
|
| Q |
256 |
ctgattc |
262 |
Q |
| |
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||||||| |
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| T |
39473737 |
ctgattc |
39473743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
| Q |
180 |
aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc |
279 |
Q |
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|||||| ||||| || |||||||| ||||||||||||||| | |||||| | | |||||||||| | | ||||||||||| || ||| ||| ||| |
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| T |
39459064 |
aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc |
39458965 |
T |
|
| Q |
280 |
cttccaattcaccctttttagattcaaactcatttacttgaccatcaa |
327 |
Q |
| |
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|||| |||||| ||| ||| ||||||| ||| ||| || ||||||||| |
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| T |
39458964 |
cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa |
39458917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
| Q |
144 |
ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt |
229 |
Q |
| |
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|||||||| ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| || |||||||| |||| |||||| |
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| T |
39389332 |
ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt |
39389417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
| Q |
197 |
ttcaaattccttttcttttgattcaaactccttt |
230 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
39390708 |
ttcaaattccttctcttttgattcaaactccttt |
39390741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 337
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
| Q |
197 |
ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt |
296 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || | ||| |||||||||||| |
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| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt |
40347408 |
T |
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| Q |
297 |
ttagattcaaactcatttacttgaccatcaagtatattctt |
337 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40347407 |
ttagattcaaactcatttactcgaccatcaagtatattctt |
40347367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
| Q |
57 |
ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt |
106 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4375 |
ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt |
4326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
| Q |
137 |
aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac |
190 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||| |||||| |||| |
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| T |
51574654 |
aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac |
51574601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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