View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_13 (Length: 269)
Name: NF3391_high_13
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 23474048 - 23473957
Alignment:
| Q |
159 |
ctgaaatggaagaagcaagacacacgagagggacgccaaagagaagaaaacacctcgagaagtaagacacaatgcatgaaggaggacaagaa |
250 |
Q |
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| T |
23474048 |
ctgaaatggaagaagcaagacacacgagagggacgccaaagagaagaaaaaacctcgagaagcaagacacaatgcatgaaggaggacaagaa |
23473957 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 23474196 - 23474143
Alignment:
| Q |
11 |
cagagaaatcactgcacaaaacaatagaaatacaagaaacaggtcgagttgtga |
64 |
Q |
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| T |
23474196 |
cagagaaatcacagcacaaaacaatagaaatagaagaaacaggtcgagttgtga |
23474143 |
T |
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