View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_16 (Length: 256)
Name: NF3391_high_16
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 5942235 - 5942158
Alignment:
| Q |
84 |
tatcatatgatacacttctccaccttaaaagccacctcatttatgtatctcttttctatcaagaaacttcctgggata |
161 |
Q |
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| T |
5942235 |
tatcatatgatacacttctccaccttaaaagccacctcatttatgtatctcttttctatcaagaaacttcctgggata |
5942158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 5942128 - 5942083
Alignment:
| Q |
191 |
aatttgaaacacatctaacatatctgactgcaactcaatggaggtg |
236 |
Q |
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| T |
5942128 |
aatttgaaacacatctaacatatctgactgcaactcaatggaggtg |
5942083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5942367 - 5942298
Alignment:
| Q |
1 |
ttgagtttcaagacactaatatttatttttcttgnnnnnnngacaaatcgtcctaattggtcatgatctca |
71 |
Q |
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| T |
5942367 |
ttgagtttcaagacactaatatttatttttcttgtttttta-acaaatcgtcctaattggtcatgatctca |
5942298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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