View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_20 (Length: 245)
Name: NF3391_high_20
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5217478 - 5217688
Alignment:
| Q |
1 |
gttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttcctcagatggtg |
100 |
Q |
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| T |
5217478 |
gttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttcctcagatggtg |
5217577 |
T |
|
| Q |
101 |
gatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacctgtatttttccataaaccatgataatgataattgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5217578 |
gatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacctgtatttttccataaaccatgataatgataattgagc |
5217677 |
T |
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| Q |
201 |
aatttatcatt |
211 |
Q |
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||||||||||| |
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| T |
5217678 |
aatttatcatt |
5217688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 40128185 - 40128066
Alignment:
| Q |
2 |
ttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttcctcagatggtgg |
101 |
Q |
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||||||| ||||||||| |||||||| |||| |||||||| |||| |||||||||||| ||||| || |||||||| ||||||||||| || |||||||| |
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| T |
40128185 |
ttgatagagcaaacaagcatgggatactattggagatggtccaggcgttgacagatctagaccttataatttccaaatcatacatttcttctgatggtgg |
40128086 |
T |
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| Q |
102 |
atggtttatggacggtcagt |
121 |
Q |
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|||||| ||||| ||||||| |
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| T |
40128085 |
atggttaatggatggtcagt |
40128066 |
T |
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