View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_22 (Length: 242)
Name: NF3391_high_22
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 43194944 - 43195166
Alignment:
| Q |
4 |
taggtgctcacacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacatagatacttcatttgctagtacaagacaatc |
103 |
Q |
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| T |
43194944 |
taggtgctcacacaattggacaagcaaggtgcacaacctttagggcacgaatctacaatgagaccaacatagatacttcatttgctagtacaagacaatc |
43195043 |
T |
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| Q |
104 |
aaattgcccaaatgcatctgggtcaggggacaacaatttggcacctcttgatcttcagactcccacttcttttgacaacaactacttcaagaaccttgtt |
203 |
Q |
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| T |
43195044 |
aaattgcccaaatacatctgggtcaggggacaacaatttggcacctcttgatcttcagactcccacttcatttgacaacaactacttcaagaaccttgtt |
43195143 |
T |
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| Q |
204 |
caaaacaagggtcttctacattc |
226 |
Q |
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||||||||||||||||| ||||| |
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| T |
43195144 |
caaaacaagggtcttcttcattc |
43195166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43189911 - 43190136
Alignment:
| Q |
1 |
gactaggtgctcacacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacatagatacttcatttgctagtacaagaca |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
43189911 |
gactaggtgctcacacaattggacaagcaaggtgcacaacatttagggtacgaatctacaatgagaccaacatagatacttcttttgctagcacaaggca |
43190010 |
T |
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| Q |
101 |
atcaaattgcccaaatgcatctgggtcaggggacaacaatttggcacctcttgatcttcagactcccacttcttttgacaacaactacttcaagaacctt |
200 |
Q |
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| T |
43190011 |
atctaattgcccaaagacatcaggatcaggggacaacaatttggcacctcttgatctccatactcccacttcttttgacaactgctactacaggaacctt |
43190110 |
T |
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| Q |
201 |
gttcaaaacaagggtcttctacattc |
226 |
Q |
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| T |
43190111 |
gttcaaaacaagggtcttcttcattc |
43190136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 43180590 - 43180811
Alignment:
| Q |
5 |
aggtgctcacacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacatagatacttcatttgctagtacaagacaatca |
104 |
Q |
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|||||| |||||||||||||||||||| || |||| |||||||||||||||||||| |||||||||||| || || |||||||||| || || |||||| |
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| T |
43180590 |
aggtgcacacacaattggacaagcaaggtgtacaaattttagggcacgaatctacaacgagaccaacataaatgctgcatttgctagcacgaggcaatca |
43180689 |
T |
|
| Q |
105 |
aattgcccaaatgcatctgggtcaggggacaacaatttggcacctcttgatcttcagactcccacttcttttgacaacaactacttcaagaaccttgttc |
204 |
Q |
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||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
43180690 |
aattgcccaaaggcatcaggatcaggtgacaacaatttggcacctcttgatcttcagactcctagttcttttgacaacaactacttcaagaaccttgttc |
43180789 |
T |
|
| Q |
205 |
aaaacaagggtcttctacattc |
226 |
Q |
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| T |
43180790 |
agaacaagggtcttctccattc |
43180811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 36190996 - 36191194
Alignment:
| Q |
1 |
gactaggtgctcacacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacatagatacttcatttgctagtacaagaca |
100 |
Q |
| |
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||||||| | ||||||||||||||||||||| ||||| || ||||| || | || ||||| || |||||||||||||||| |||||| | ||||| || |
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| T |
36190996 |
gactagggggtcacacaattggacaagcaaggtgcactacatttagagcccacatttacaacgactccaacatagatacttcctttgctcgcacaaggca |
36191095 |
T |
|
| Q |
101 |
atcaaattgcccaaatgcatctgggtcaggggacaacaatttggcacctcttgatcttcagactcccacttcttttgacaacaactacttcaagaacct |
199 |
Q |
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|||| ||||| || |||| || || |||||||| ||||||||||| ||||||||| || || || || ||||||||| | |||||||||||||| |
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| T |
36191096 |
atcagggtgccccaagacatcgggttccggggacaataatttggcaccccttgatcttgcaacaccaacatcctttgacaaccattacttcaagaacct |
36191194 |
T |
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