View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_24 (Length: 242)
Name: NF3391_high_24
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 1009490 - 1009706
Alignment:
| Q |
12 |
atatttcatttaattagctattaaaatagcaacaactagaaatgcttggaaataaatagtatgaattaagttaagagttttgcttgtgtaagagattaaa |
111 |
Q |
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| T |
1009490 |
atatttcatttaattagctattaaaatagcaacaactagaaatgcttggaaataaataatatgaattaagttaagagttttgcttgagtaagagatcaaa |
1009589 |
T |
|
| Q |
112 |
acagagtgctaaaaaggtgttagaacataagcttgttgttttggaaaattatgnnnnnnnncacagtaatatattggagaatagaagagtttctaccctt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
1009590 |
acagagtgctaaaaaggtgttagaacataagcttgttgttttggaaaattttgaaaaataacacagtaatatattggagaatagaagagtttctaccctt |
1009689 |
T |
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| Q |
212 |
ctcctcttgaataaact |
228 |
Q |
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||||||||||||||||| |
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| T |
1009690 |
ctcctcttgaataaact |
1009706 |
T |
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