View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_high_4 (Length: 438)
Name: NF3391_high_4
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 53540842 - 53540433
Alignment:
| Q |
11 |
cacagactaaattcgggatttgatgtgtcacgatgttttccaaccctttcctcataccacattaatgcaccacatgattcacaattaaaacgtggctctc |
110 |
Q |
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| T |
53540842 |
cacagactaaattcgggatttgatgtgtcacgatgttttccaaccctttcctcataccacattaatgcaccacatgattcacaaacaaaacgtggctctc |
53540743 |
T |
|
| Q |
111 |
ccacttgaaagtaatctgcgttaaatttgcatacacataagtttgctctgatacatatctcatatgctagtttgatatgagacttgttaacataattttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
53540742 |
ccacttgaaagtaatctgcgttaaatttgcatacacataagtttgctgtgatacatatctcatatgctaatttgatatgagacttgttaacataattgtc |
53540643 |
T |
|
| Q |
211 |
cacacaaattttctttatgctgcaaaaggtagaaagtttaaaaataacctgtgtcgttggctccatctacttcgtcttcatcttcaacatcatcttataa |
310 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540642 |
caaacaaattttctttatgctgcaaaaggtagaaagtttaaaaataacctgtgtcattggctccatctacttcgtcttcatcttcaacatcatcttataa |
53540543 |
T |
|
| Q |
311 |
attggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaattaaataatgattttcacgcatacca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
53540542 |
attggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaattaaataatgatttccactcatacca |
53540443 |
T |
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| Q |
411 |
tattaattat |
420 |
Q |
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| T |
53540442 |
tattcattat |
53540433 |
T |
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