View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3391_high_6 (Length: 418)

Name: NF3391_high_6
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3391_high_6
NF3391_high_6
[»] chr8 (8 HSPs)
chr8 (73-411)||(44645370-44645708)
chr8 (65-114)||(14815746-14815795)
chr8 (65-114)||(14829945-14829994)
chr8 (148-216)||(37927814-37927882)
chr8 (161-216)||(37959470-37959525)
chr8 (61-132)||(37927967-37928038)
chr8 (51-98)||(44672648-44672695)
chr8 (65-102)||(5568726-5568763)
[»] chr3 (2 HSPs)
chr3 (61-131)||(25720402-25720472)
chr3 (161-222)||(25720242-25720303)
[»] chr5 (1 HSPs)
chr5 (185-222)||(37450015-37450052)
[»] scaffold0005 (1 HSPs)
scaffold0005 (182-218)||(178105-178141)
[»] chr4 (1 HSPs)
chr4 (182-218)||(14639151-14639187)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 73 - 411
Target Start/End: Original strand, 44645370 - 44645708
Alignment:
Q  73 caaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattcatcatatagatgaatcaattcagcatatagatgactgatg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44645370 caaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattcatcatatagatgaatcaattcagcatatagatgagtgatg 44645469  T
Q  173 aagttgtcacgtgtgtcctcccctctaaagctgaggaacacatcgtacttctgagtttgactaggaggagaaatagccgcagcagcagaagaacttgatc 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44645470 aagttgtcacgtgtgtcctcccctctatagctgaggaacacatcatacttctgagtttgactaggaggagaaatagccgcagcagcagaagaacttgatc 44645569  T
Q  273 ccaacattgtaaagaaacagagttgtattttcctgtatttgcactgcacctcttaagttaacttttcttaggtgtctccgcctgctttttgtatcaacat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44645570 ccaacattgtaaagaaacagagttgtattttcctgtatttgcactgcacctcttaagttaacttttcttaggtgtctccgcctgctttttgtatcaacat 44645669  T
Q  373 atatacaatagctgcatgtttttgctgtctatgtctctg 411  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44645670 atatacaatagctgcatgtttttgctgtctatgtctctg 44645708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 14815746 - 14815795
Alignment:
Q  65 agttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaac 114  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  14815746 agttcatccagacaccatgtggaggaagcatagttctcagaaaaaacaac 14815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 14829994 - 14829945
Alignment:
Q  65 agttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaac 114  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  14829994 agttcatccagacaccatgtggaggaagcatagttctcagaaaaaacaac 14829945  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 37927882 - 37927814
Alignment:
Q  148 caattcagcatatagatgactgatgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatc 216  Q
    |||||| ||||| ||||||||  ||||||||||||| || ||||| ||||| |||||||||||||||||    
T  37927882 caattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctctgaagctgaggaacacatc 37927814  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 37959470 - 37959525
Alignment:
Q  161 agatgactgatgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatc 216  Q
    ||||||||| |||||| || ||| |||||||| |||||||||||||||||||||||    
T  37959470 agatgactggtgaagtagtgacgagtgtcctctcctctaaagctgaggaacacatc 37959525  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 37928038 - 37927967
Alignment:
Q  61 tgtgagttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattc 132  Q
    ||||| ||||||||| |||||||||||||||||||| || || |||||||  || ||||||||  |||||||    
T  37928038 tgtgaattcatccaagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattc 37927967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 44672648 - 44672695
Alignment:
Q  51 ggaggatatgtgtgagttcatccaaacaccatgtggaagaagcatagt 98  Q
    |||||||| |||||||||||||||||||||| |||||| |||| ||||    
T  44672648 ggaggatacgtgtgagttcatccaaacaccaagtggaataagcgtagt 44672695  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 5568763 - 5568726
Alignment:
Q  65 agttcatccaaacaccatgtggaagaagcatagttctc 102  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  5568763 agttcattcaaacaccatgttgaagaagcatagttctc 5568726  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 25720472 - 25720402
Alignment:
Q  61 tgtgagttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgatt 131  Q
    |||||||||||||| ||||||||||||||||||||| | ||| || ||||  | ||| |||||||||||||    
T  25720472 tgtgagttcatccatacaccatgtggaagaagcataatgctcggataaaatgatgacgtaaatcattgatt 25720402  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 25720303 - 25720242
Alignment:
Q  161 agatgactgatgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatcgtactt 222  Q
    |||||||| |||||||||||||| || ||||| ||||| || ||||| ||||| ||||||||    
T  25720303 agatgactaatgaagttgtcacgagtatcctctcctctgaaactgagaaacacgtcgtactt 25720242  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 37450052 - 37450015
Alignment:
Q  185 gtgtcctcccctctaaagctgaggaacacatcgtactt 222  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  37450052 gtgtcctcgcctctaaagctgatgaacacatcgtactt 37450015  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 178141 - 178105
Alignment:
Q  182 cgtgtgtcctcccctctaaagctgaggaacacatcgt 218  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  178141 cgtgtgtcctcgcctctaaagctgatgaacacatcgt 178105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 14639151 - 14639187
Alignment:
Q  182 cgtgtgtcctcccctctaaagctgaggaacacatcgt 218  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  14639151 cgtgtgtcctcgcctctaaagctgatgaacacatcgt 14639187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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