View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_12 (Length: 295)
Name: NF3391_low_12
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 1009393 - 1009132
Alignment:
| Q |
1 |
ctaaggatcgttctggaaaattttatgaggaatgctattcatagcgtaaacatttgttgcgaacctaccaggaaggaattttgagtgttagatgtagtgg |
100 |
Q |
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| T |
1009393 |
ctaaggatcgttctggaaaattttatgaggaatgctatttatagcgtaaacatttgttgcgaacctaccaggaaggaattttgagtgttagatgtagtgg |
1009294 |
T |
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| Q |
101 |
tagaggaaaacttgggttgagtcaaagttaaaagggacccgtaacagaactacaaataacatgtcgtgaagttttcgggtaaattattttgcttgatgtc |
200 |
Q |
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| T |
1009293 |
tagaagaaaacatgggttgagtcaaagttaaaagggacccgtaacagaactacaaataacatgtcgtgaagttttcgggtaaattattttgcttgatgtc |
1009194 |
T |
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| Q |
201 |
gcatgtatgttatatttccca---gttatttgtgcattttctcataatatagggagtatgttatatttcctagt |
271 |
Q |
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| T |
1009193 |
gc-----------atttcccaaattttatttgtgca-tttctcataatataggaagtatgttatatttcctagt |
1009132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 1009150 - 1009084
Alignment:
| Q |
205 |
gtatgttatatttcccagttatttgtgcattttctcataatatagggagtatgttatatttcctagt |
271 |
Q |
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| T |
1009150 |
gtatgttatatttcctagttatttgtgcattttctcataatatagggagtatgttatatttcctagt |
1009084 |
T |
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