View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_14 (Length: 259)
Name: NF3391_low_14
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_14 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 21890275 - 21890519
Alignment:
| Q |
1 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaattttcctcaattctcagaaacatgtatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21890275 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaattttcctcaattctcagaaacatgtatg |
21890374 |
T |
|
| Q |
101 |
atactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21890375 |
atactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttagg |
21890474 |
T |
|
| Q |
201 |
attttaaattcataatatctcatgtgatcatagtaactaactaaa |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21890475 |
attttaaattcataatatctcatgtgatcatagtaaataactaaa |
21890519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41050115 - 41049870
Alignment:
| Q |
1 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaattctcagaaacatgtat |
99 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |
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| T |
41050115 |
aataacccaagatatatatacctgcacgaaagcatcgcaatttctataaccaaaccaaaacacctttgccaattctttctcaattctcagaaacatgtat |
41050016 |
T |
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| Q |
100 |
gatactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttag |
199 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41050015 |
gatactactatcttatacatgtttctcgtaacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgtcggaggccttag |
41049916 |
T |
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| Q |
200 |
gattttaaattcataatatctcatgtgatcatagtaactaactaaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41049915 |
gattttaaattcataatatctcatgtgatcatagtaaataactaaa |
41049870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 19040 - 18793
Alignment:
| Q |
1 |
aataacccaagatatatata--cctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaattctcagaaacatgt |
97 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| |
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| T |
19040 |
aataacccaagatatatatatacctgcaagaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaattctcaaaaacatgt |
18941 |
T |
|
| Q |
98 |
atgatactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggcctt |
197 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18940 |
atgatactactatcttatacatgtttctcataacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggcctt |
18841 |
T |
|
| Q |
198 |
aggattttaaattcataatatctcatgtgatcatagtaactaactaaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18840 |
aggattttaaattcataatatctcatgtgatcatagtaaataactaaa |
18793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22616202 - 22616436
Alignment:
| Q |
1 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaattctcagaaacatgtat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| || |
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| T |
22616202 |
aataacccaagatatatatacctgcacgaaagcatcgcaatctctataaccaaaccaaaacacctttgccaattctttctcaattctcagaaacatgcat |
22616301 |
T |
|
| Q |
100 |
gatactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttag |
199 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
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| T |
22616302 |
catactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcac--ttgttggaggccttag |
22616399 |
T |
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| Q |
200 |
gattttaaattcataatatctcatgtgatcatagtaa |
236 |
Q |
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| ||||||||||||||||||||||||||||||||||| |
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| T |
22616400 |
ggttttaaattcataatatctcatgtgatcatagtaa |
22616436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 13621850 - 13621732
Alignment:
| Q |
127 |
ataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttaggattttaaattcataatatctcatgtg |
226 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13621850 |
ataacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttaggattttaaattcataatatctcatgtg |
13621751 |
T |
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| Q |
227 |
atcatagtaactaactaaa |
245 |
Q |
| |
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|||||||||| |||||||| |
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| T |
13621750 |
atcatagtaaataactaaa |
13621732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13623546 - 13623445
Alignment:
| Q |
1 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaattctcagaaacatgtat |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
13623546 |
aataacccaagatatatatacctacacgaaagcatcgcaatctctataaccaaaccaaaacaccttcgccaattctttctcaattctcagaaacatgtat |
13623447 |
T |
|
| Q |
100 |
ga |
101 |
Q |
| |
|
|| |
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|
| T |
13623446 |
ga |
13623445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 11168138 - 11168036
Alignment:
| Q |
6 |
cccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaattctcagaaacatgtatgatac |
104 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| || |
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|
| T |
11168138 |
cccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaattctcagaaacatgtatgacac |
11168039 |
T |
|
| Q |
105 |
tac |
107 |
Q |
| |
|
||| |
|
|
| T |
11168038 |
tac |
11168036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39645227 - 39645156
Alignment:
| Q |
1 |
aataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt |
74 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||| |||||||| ||| |||||||||||||||||| |
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|
| T |
39645227 |
aatagcccaagatatatatacctgcatgaaatcattgcaatatctataac--aacaaaaacacctttgccaatt |
39645156 |
T |
|
Back To:
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