View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_18 (Length: 251)
Name: NF3391_low_18
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_18 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 43598838 - 43598646
Alignment:
| Q |
44 |
atataataatgtattgtccctgccaactgaattatattcacgg-gacatgacagaccgttttctattggccggttccggtgacaatgtcccctccagaaa |
142 |
Q |
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| T |
43598838 |
atataataatgcattgtctctgccaactaaactatgatcacggagacatgacagacccttttctattggccggttctggtgacaatgtcccctcgagaaa |
43598739 |
T |
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| Q |
143 |
caatggggtttgacacctcgattgagaatgagaacacacatacagtgaaactttgatcaaaatcagtacgattatgaacttcctctaagttgt |
235 |
Q |
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| T |
43598738 |
caatggggtttgacaactcgattgagaatgagaacacacataccgtgaaactttgatcaaaatcagtacgattatgaacttcctctaagttgt |
43598646 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 12311457 - 12311496
Alignment:
| Q |
44 |
atataataatgtattgtccctgccaactgaattatattca |
83 |
Q |
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| T |
12311457 |
atataataatgtattgtccctgccaactgagctatattca |
12311496 |
T |
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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 12623 - 12575
Alignment:
| Q |
20 |
ttcgaaccctgacccctgcatataatataataatgtattgtccctgccaactga |
73 |
Q |
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| T |
12623 |
ttcgaaccctgacccctgcatat-----aataatgcattgtccctgccaactga |
12575 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 37417185 - 37417214
Alignment:
| Q |
44 |
atataataatgtattgtccctgccaactga |
73 |
Q |
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| T |
37417185 |
atataataatgtattgtccctgccaactga |
37417214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 6447536 - 6447580
Alignment:
| Q |
44 |
atataataatgtattgtccctgccaactgaattatattcacggga |
88 |
Q |
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| T |
6447536 |
atataataatgcattgtccctgccaactgagttatgctcacggga |
6447580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 34034390 - 34034361
Alignment:
| Q |
44 |
atataataatgtattgtccctgccaactga |
73 |
Q |
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| T |
34034390 |
atataataatgtattgtccctgccaactga |
34034361 |
T |
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