View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_19 (Length: 250)
Name: NF3391_low_19
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5942518 - 5942635
Alignment:
| Q |
1 |
aaccacatgttacaattacatcactccactctagcaattgttcgtaaatgaaaggtttcttctaaataataatttgaagtgataaaagataaattaggga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5942518 |
aaccacatgttacaattacatcactccactctagcaattttccgtaaatgaaaggtttcttctaaataataatttgaagtgataaaagataaattaggga |
5942617 |
T |
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| Q |
101 |
taggtcatacatgctttg |
118 |
Q |
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|||||||||||||||||| |
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| T |
5942618 |
taggtcatacatgctttg |
5942635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 5942767 - 5942887
Alignment:
| Q |
122 |
taattttaagcaaaacgtgatttacagccgcccatccaaacagacacttagagggacacaagcaaaaggtgtataatattttctt-----ttacaaatga |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||||||||| |
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| T |
5942767 |
taattttaagcaaaacgtgatttgcagccgcccatccaaacagacacttagtgggacacaagcaaaaggtgtataatattctttttcaaattacaaatga |
5942866 |
T |
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| Q |
217 |
acttattgaagtttccctcct |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5942867 |
acttattgaagtttccctcct |
5942887 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 31363221 - 31363167
Alignment:
| Q |
115 |
tttgccgtaattttaagcaaaacgtgatttacagccgcccatccaaacagacact |
169 |
Q |
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| T |
31363221 |
tttgccgtaattttaagcaaaacgtaatttacagccgcccatccaatcagacact |
31363167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 8778968 - 8778914
Alignment:
| Q |
115 |
tttgccgtaattttaagcaaaacgtgatttacagccgcccatccaaacagacact |
169 |
Q |
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|||||| | ||||||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
8778968 |
tttgccatgattttaagcaaaacgtgatttgcaaccgcccatccaaacatacact |
8778914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 16930216 - 16930274
Alignment:
| Q |
115 |
tttgccgtaattttaagcaaaacgtgatttacagccgcccatccaaacagacacttaga |
173 |
Q |
| |
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|||||||| |||| |||||||||||| || ||||||||||||||||||| |||||||| |
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| T |
16930216 |
tttgccgtgatttctagcaaaacgtgacttgcagccgcccatccaaacaggcacttaga |
16930274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 43684573 - 43684525
Alignment:
| Q |
122 |
taattttaagcaaaacgtgatttacagccgcccatccaaacagacactt |
170 |
Q |
| |
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|||||||||||||||| |||||| ||| |||||||||||| |||||||| |
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| T |
43684573 |
taattttaagcaaaacttgatttgcagtcgcccatccaaagagacactt |
43684525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 28739626 - 28739582
Alignment:
| Q |
119 |
ccgtaattttaagcaaaacgtgatttacagccgcccatccaaaca |
163 |
Q |
| |
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|||| |||| |||||||||||||||| ||||||||||| |||||| |
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| T |
28739626 |
ccgtgatttcaagcaaaacgtgatttgcagccgcccattcaaaca |
28739582 |
T |
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