View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3391_low_2 (Length: 491)
Name: NF3391_low_2
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 33594657 - 33594372
Alignment:
| Q |
18 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594657 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
33594558 |
T |
|
| Q |
118 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatc---------atgcaattagactttgtccaa------- |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33594557 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatcatgattaaaatgcaattagactttgtccaaaacctat |
33594458 |
T |
|
| Q |
202 |
------ttgtactac--taaaagttttaaatttgaagattattgagcttgtgcaattatgttaatttctctaatgattttgacatttta |
282 |
Q |
| |
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|||| |||| ||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33594457 |
ttagatttgttctactataatagttttaaattggatgatta---agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33594372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 33601788 - 33601503
Alignment:
| Q |
18 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601788 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
33601689 |
T |
|
| Q |
118 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatc---------atgcaattagactttgtccaa------- |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33601688 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatcatgattaaaatgcaattagactttgtccaaaacctat |
33601589 |
T |
|
| Q |
202 |
------ttgtactac--taaaagttttaaatttgaagattattgagcttgtgcaattatgttaatttctctaatgattttgacatttta |
282 |
Q |
| |
|
|||| |||| ||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33601588 |
ttagatttgttctactataatagttttaaattggatgatta---agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33601503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 33587485 - 33587200
Alignment:
| Q |
18 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33587485 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcattagtaaaaagggtgagctt |
33587386 |
T |
|
| Q |
118 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatc---------atgcaattagactttgtccaa------- |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
33587385 |
tatgactttggttcttctccaagtacattttgaagataaaatgtaaaattaatgtatagcatcatgattaaaatgcaattagactttgtccaaaacctat |
33587286 |
T |
|
| Q |
202 |
------ttgtactac--taaaagttttaaatttgaagattattgagcttgtgcaattatgttaatttctctaatgattttgacatttta |
282 |
Q |
| |
|
|||| |||| ||| ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33587285 |
ttagatttgttctactataatagttttaaattggatgatta---agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33587200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 313 - 477
Target Start/End: Complemental strand, 33587018 - 33586854
Alignment:
| Q |
313 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33587018 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataaccgagagtgttatatttccgtcga |
33586919 |
T |
|
| Q |
413 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcctctctgtg |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33586918 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcctctctgtg |
33586854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 33594190 - 33594033
Alignment:
| Q |
313 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
33594190 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatctttccatcaa |
33594091 |
T |
|
| Q |
413 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcct |
470 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
33594090 |
agccattggaaggtgcatcaatggcaaaccctccacctgccattttcaaccttctcct |
33594033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 33601321 - 33601164
Alignment:
| Q |
313 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
33601321 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatctttccatcaa |
33601222 |
T |
|
| Q |
413 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcct |
470 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||| |
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|
| T |
33601221 |
agccattggaaggtgcatcaatggcaaaccctccacctgccattttcaaccttctcct |
33601164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 33561780 - 33561697
Alignment:
| Q |
318 |
aaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttat |
401 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||| |
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|
| T |
33561780 |
aaaacctgaaattccaaggtcatatccaaaaatgagtccactagatgctgcaacaatgcaagtgatgacaactgagagtgttat |
33561697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33616046 - 33615984
Alignment:
| Q |
18 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaa |
80 |
Q |
| |
|
||||| ||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
33616046 |
tttctcagaatgtctggaaagaatttttggagaaatggcaccatcgttgtaacacctcctgaa |
33615984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 400
Target Start/End: Complemental strand, 33608078 - 33607998
Alignment:
| Q |
320 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| | ||| ||||||| |
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| T |
33608078 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
33607998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33626543 - 33626481
Alignment:
| Q |
18 |
tttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaa |
80 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||| ||| ||||| |||||||||||| |
|
|
| T |
33626543 |
tttcttagaatgtctgggaagaattttttaagaaatggcttcatagttgtgacacctcctgaa |
33626481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 33608259 - 33608200
Alignment:
| Q |
21 |
cttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaa |
80 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| |||||||| ||||| |||||||||||| |
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|
| T |
33608259 |
cttagaatatctggaaagaatttttgaagaaacggcaccatcgttgtgacacctcctgaa |
33608200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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